HsaINT0118703 @ hg19
Intron Retention
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:16387]
Coordinates
chr17:45891887-45892718:-
Coord C1 exon
chr17:45892581-45892718
Coord A exon
chr17:45891981-45892580
Coord C2 exon
chr17:45891887-45891980
Length
600 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGTCATCTGTCCTGGCCCAGGGC
3' ss Score
7.91
Exon sequences
Seq C1 exon
CAAGAAGCTCTGTACATGAAGGGGCGCGAGCTCACCCCCCAGCTATCGCAGACCAGCATCCTGTCCCTTGCTGATTCCCACACGGAGTTCTTCGATGCCTGCGAGGTTCTCCTCTCCGCCAGCTCTTCTGAGAATGAG
Seq A exon
GTGAGGGAGGAGAGAAGCTGGCAGTGAGGCGGGGTAGGGGGGACCTTGGGAACAGAAGGGTGGGGTCCACAGAGACCATAGATTCCTCAGCCCCTTCTCACCACCTCAGCTGCTATCTCTGGGACTATGTCCAGATCAGCTGAGTTTGTGTGGCCCAGCTCAGAAATCTCTGCTAGGGACTCTTCTCCTAGAGGAGTGTGACATTTGTATCCCCATTGGGTTCTCCTGAAACTACTGCCATAGTTGCAACCCCGGTCATCTTCCTATGACCCTGTCTCAGCTTCAGCACTCCCTTGATTCCCTCTTCCAAAACCCTGACCCTCAGTAATCCCCAACTTCCCTTCCCTCTGTGTCCCATCAAGTCCCTGAGCTTTTTCCCGCCAGCCACAGGGCCCGGCCCTCCCCTTCCCAAGGTGGCTGGGCACACTCCGTGATGCCAGGCATCCCGGGGCAATGTCTTAGGGCTCAGAGTGCCCCCAATACATTCTCTTCCCCTTCCCACCAAAGGGCTAGTTGGGCAGATTCTTGCCAGGCCCTGGGCACTGCCCAGCTGCCCGGGGGAGGCCCAGTCTGCCCGGCCTGTCATCTGTCCTGGCCCAG
Seq C2 exon
GGCTCAGAGGAGGAGGAGTCCTGTACCAGTGAAATCACCACCAGCCTGTCTGAGGAGATGCTGGACCTCAGGGGAGCTGAGCGCTGTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025-OSBPL7:NM_145798:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=NA C2=0.535
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PD(7.0=15.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTCTGTACATGAAGGGGC
R:
CAGCTCCCCTGAGGTCCAG
Band lengths:
214-814
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)