GgaINT1020420 @ galGal4
Intron Retention
Gene
ENSGALG00000028934 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr27:3905281-3905914:+
Coord C1 exon
chr27:3905281-3905412
Coord A exon
chr27:3905413-3905824
Coord C2 exon
chr27:3905825-3905914
Length
412 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
CCGACTGTGCCCGTCCCCAGGCG
3' ss Score
9.13
Exon sequences
Seq C1 exon
CCCGACGTGCTGCCTGCCAAGGGCCGGGAGCAGCAGCGCTCGCAGCGCAGCATCGCCTCACTGGCCGACTCACACACTGAGTTCTTCGACGCCTGTGAGGTGTTCCTCTCTGCCAGCTCCTCTGAGAATGAG
Seq A exon
GTGGGGGATCTTGGGGCGGGGGTGGGCAGGGGGGGCGTCTGCAGAGCCAAATGGGACCCCCAGGCTGGTGATGCTCCCGTTGGTTCATCTCTCTGTTCTCTCGCCCCATCCCTCTCCATTAGCCAGCCCAGGCTTCCATGTCCCCTCTGGTTCCTATGTCCCTTCCAGCTACCCACAGTCCCCCCAATCAGGGTGTTTGGGGGCTCCCCACTCTCTGAGCATAGTGGTGGGACGAGGCTTCTTCCCCAGCACCTCCCATCCTTCAGTCCCTGCATCCCCCCACTGTTCCCATATTGGAGTCCCCAGTCCTGTCCCACACAGCCAACCTCCTCCACGGGTGCCCTTCCCACCACCCCCCCTGCTGGGTGACCCCCACCCCCCCTGCAGCCCACCCGACTGTGCCCGTCCCCAG
Seq C2 exon
GCGTCGGACGATGAGTCCTGCATCAGTGAGGCCACCAACAGTATTGATGAGGACCTGGCCGAGCCGGGGGGCCTGGACGTCCCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028934:ENSGALT00000043335:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.523 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTGCTGCCTGCCAAG
R:
CTGTTTGGGGACGTCCAGG
Band lengths:
219-631
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]