DreINT0108865 @ danRer10
Intron Retention
Gene
ENSDARG00000063730 | osbpl6
Description
oxysterol binding protein-like 6 [Source:ZFIN;Acc:ZDB-GENE-070912-206]
Coordinates
chr9:1404710-1407561:-
Coord C1 exon
chr9:1407424-1407561
Coord A exon
chr9:1404798-1407423
Coord C2 exon
chr9:1404710-1404797
Length
2626 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TCTCTCTTTCTCTCTCTCAGGCC
3' ss Score
12.52
Exon sequences
Seq C1 exon
GCCTGTGAGCCTCTGCATGTGGGTCTGCCTCTCTCTCAGCAGGTCTCAAACGAGAGCAGACTCTCCATGTCAGAGTCGGTGTCGGAGTTCTTCGATGCTCAGGAGGTGCTTCTGTCCGCAAGCTCATCTGAGAACGAG
Seq A exon
GTATGTTGATCATTACTTTTCTACTTTCGTTTTTATTAAATAAATGCAGCATTGGTGCATTTATAAGTACATTATTAAAACGTTATTTATTTATAGTTGCAGGCCAAATTATTCGCAGTTTTAATTCTTTATCAAATAGTTACCAAGTGATGTTTAATAGAGCAAGGCATTTTTACAGTGTTTTACTGCAATTATAATGTTCAACATAAATTATTATGATTATTATTAGCAAAGTATTGTTATTATACAGAAAAAAAAGACTAGATGAGACAGTCAGACATTCATTTAACCTCAAGATCAGCTTTATTCGCTCTATCATTTAGTGCTAGGTAAATAATTAAATAAGAACAAGCTATGTTCTGCTAATATTAAGTCAGAGGTGTCCAAACTCAGTTCTGGAGGGCCGGTGTCCTGCATAGTTTAGCTCCAACTTCCTTCAGCGCACCTCCCTGGAAGTTTCTAGTATACCTAGAGAGCTTGATTAGCTGGTTCAGGTGTGTTTAATTGGGGTTGGAACTAAAATATGCAGGACACCGGCCCTCCAGGACTGAGTTTGGACACCCCTGTATTCAGTGATACACATTTCAGTCACAGTATTGAGAATATTGGTGCATTCTGCTTGATTTAGCAATGAAAGTAGTTCCAGATGAAGTTAAATACTGCATCTCCTATTACCCTTTTCAGTAAATTGTCTAAAACATTGATATAGAATAGGGTTTTTGCTCTTGTTACTGTAGTTTAAATGCATTTCTGTTATTTCTGAACTCTGCTGTATATAAGCAATTCATTAAAGGTTCTGTTAAATGCTTTGAAAAGTGCATTATTTTATTCAAAATTTAACATAATATAAACTGAAACTCGAACCGAGGGCAGGGCATGAGGTAGCTCCTCCCCCTTTAAAAAAACTGCCAATAGCAGGCCAGGATTGGCTAATCGGGAGGACTGGGAGAATTCCCGGTGGGCCGGTCCGTTTTTTGGCCGCGAGGGCCGGTGTCCCTAGCTCCAGAATCTGTGGCTCTCAGCAGTCACACTTTTTAAATAATTTATTTATTTACTTGACCACAGTCTTCTTATTCATTATTTTACCACAGCTCTACTCTTTTTATATACAACCAGCCTGCAGGTTAATGATGATATAACTCAGATGAGGCAGTGCTTCATATAAAGCTATTGTGGTCCAGTGGTTAGCACAGTAGATTATGACGCCGCCGACCCGGGTTTGATCCTCATCTGAGTTTTTTTTGTTTTATTTTTTTTATTGTTAAGACATATAATACTGTAAGGGTTGTTGAACATTTAAAGTTCTAAAGCAACTGTTTTCTCAAAAAAAGACGGGATAGTGTAATTAGAAACTGAATTGGAAATGAGGTGGGCCGGTCTGAGGCTTGAAACTCCAGGGCTGAAAAAGAGTCCCACTCCGGCCCTGGCCAATACTGTACAGTTTTATCACAGCTCTGCCAGTGAGAGTGGTTGAGCTCAAGCGCATCAAATGAAAAGCCAATGAGAAGAAGGAGGCGGGGCATGTTAGACACCAGAGAGCATTTGATTGGTCAGAAGATTTGATGAGGAACTGAAGTATGAGGTGACAGCAAAAAAACATTGATCCAATGAGACGGAAGTAACAAACTGCAAACGTTGGATGTTTATATCAGATTTATATCTCCTAAATGTGAATTTTTTCACATTAGGTTGGAGCTCACTGGACTAGAGATAGCCTTAAACCTAACAGAGTGTAGTTAAATCTCCATTCTTACAGTTGGTGCCGAAACGTTGGATATGGGACATGGAACTATTGCTCCCTAATGAGCCTATAACTGAAGAGTATGGGATCAGATATAAGTCAAAACTTTACATTGAGTCATCAATGATGATGACTGTGATCCGCTCTTACAATTATAAATACAGTCTAAATTTGAAGGTCGCTTTAAATTGGAGCTGACAGCAAATATAAATAAATTCTAATAAATAACACCATTCTAATAATATTTATCAAACACAATTTAGAAATTACATGAATACGTCAGCGCAATAGCTTTGTGGTTTGGGTGCTGACATATGGTGCAGTAGCACTTCAGGGTGTCCTGAGTTCGAATCCTGGCTTGTGGACATTTCCCGTCCCTACCCTCTCTCTCACCCACTTCGCTTTCTGTCTGAAACACTGTCCTCTCCGCTTAATAAAGGAGAAAAGGCCAAAAATAAATCTTAAAAAAAGAAAGAAAGAATGAGCATGAATGCATTTAGATAGGTCAGGAAAGTTACTTTTATAAAGCTTTAAATAATATCAGGAAGTCATTGAAGATCTTCATTCTGCCTTCAGAGCGTGCGTCTGTTTATTTTATATCAACGCAGCCTTATTCTGTTCGGGGTTTATCGGTCATCTGTCGTCTGTGTCAGCATGATTTGTGTGTTTAAGTGTGTTTGTTTGTATATTTGCACACTGCACTGCGGTAGGTCATTTTACACACATACACACACACACACACACACACACACACACACACACACACACACACTGTACAGTTAGTCAGCACTGCGCAAAATGAAAGACAGCGAGTAACATCATCTCTCTCTCTCTCTCTCTCTCTCACACACACTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCAG
Seq C2 exon
GCCTCTGATGATGAGTCTTACGTCAGTGATGTGAGTGATAATATTTCCGAGGACAATGCCAGCGTCACAGATAACGTTTCCAGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063730:ENSDART00000124777:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=NA C2=0.967
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]