BtaINT0106002 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18493729-18500657:-
Coord C1 exon
chr2:18500520-18500657
Coord A exon
chr2:18493817-18500519
Coord C2 exon
chr2:18493729-18493816
Length
6703 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TCTGTTCTTCTCTTCCTTAGGCT
3' ss Score
11.43
Exon sequences
Seq C1 exon
GCTGGTGAGCAAATCCACGTCAGTCTCCCCCTGTCACAGCAAGTAGCCAATGAGAGCCGCCTCTCCATGTCAGAATCTGTCTCTGAGTTCTTCGATGCCCAAGAAGTGCTCCTCTCTGCAAGCTCATCAGAGAATGAG
Seq A exon
GTAAGGTTCCTGGATGCGTCAACCCCGACTGCTTCTGACCATGAGTTAGGTTAAAGAAAGTCAGACTTTAGAACTTCGTTTTAACATCATAATAAGATGTCCAAATAGTAGCAAAGCCAAAGCATGCAAACTGTATGGATTCCATTTACTGAGCCCTTAGCCTTCTGGACACCAACTCAATACTCTTAAATTTGATGAATAAAAAGAAAGAATCAAGACTTATTCTGATATACCTGTACAGTTCATTTTTCAGGGTAAACAGATAGGTGATAACAGCTCTTTATAGAAGGAGACTAGCTAATAAATGTAAAAAGAATGAGAGCATAAGAAAAATACCATTCTTATTTGTACATACAAACACACATCTTTGCTAGAGACTGAATTTGAATTTAGCTAGCATAACATCTAGCATATATCTAGTTGAATACTTATGGCTCCTAGAGGTTACCAACGGCTACCATGAGGCTTCCCTGGTGGCTTAGTTGGTAAAGAATCTGCCTGCAATGCAGAAGACCCGGGTTCAATCCCTAGGTTGGAAAGATACCCTGGAGAAAGAAATGGCAACTCATTCCAGTATTGTTGCCTGGGAAATCCCATGGATAGAGGAGCCTGGTGGGCTTCCAGCCCATGGGGTCACAAGAATCAGACACGACCCAGCGACTAAACCACTGCCACTGGCTACCATTAAAGATTTATTGGATTGCTTGTCATGCTCATGAATCTTGGCATGGTCTTGGTCAGGTTGCAGAAATTCTTTTACTGAAATTTAGTCAAGTACACTTTGAATTTTTTCTTTTTTGGCGTGAGAGAAGCAGCCAAAACTCTTTCCTACGCAATTGTTTTAATTTTGTCATTTGAGATTGAAATCTGTAATGCATTTTTACAAAAAGGGAATGAAGTAATTAAGTAAGTGTTAGTTGCTCAGTCATGTCTGAGTCTTTGTGACCTCATGGACTATAGCCCACCAGGCTCCTCTGTTCATGGAATTTTCCCGGCAAGAATACTGGAGTGGGTAGCTTTTCCTTTTTCCAAGGGGTCTTCCCGACCCAGGAATAGAACCTGGGTCCCCTGCATTGCAGGCAGATTCTTTACCATCTGAGCCACCAGGAAAGTCCAAAAGCAGATGAAATCACTGATAGATGTTATTTCCATATGCATCAAAAATAGATTGGAAGGAAGCATCCTGACAGTAGTAGTTCCTTTTGGACATTTGGTATTACGAGTGATTTTAGAAAATAGAAATAATGAACACATATCACTTTGATATGGAGAAAAATTAAAATAGAATTGTTATATCAGGTACTAAATTTGTTACCACATCAGACTAAGCACCTGCCTCTCCAATTCCAAGTCATAGATTAACAGATTCACAGATATTCCCATTCACAAGGCAGAAACTAGTTTAATTATTCATAGACAATTGATGTTATCAAATAGACAAAATAATCCTGTTTGCTAATCATGTCTCTTTCCCTGGAGGCAAATCTGCCCAGGAAGCGTAATTATGGTTAGGAGGTTGGTGAGCAAGGAAGGAATGGGAGCAGGAGAAGTGAGCTGAAGGCTGCGAGGGCCAGGATGTAATTGCTCCAAACTCTCATCTCCATTTCAGGGATGCTGTCCCATGTGGTGGGGAATTAGTGTCTGTGGGTCAGTCTCCACCCTAGGGACCACAGTGCTGGAGACGTGTTCCCAGTATTTCTTTCTTCTCTGATTCTCCCTTTTCTGGGATCCCATTACTTGTCCTTATTCAAGCAAACTTGACTGTACATTATCTAGGCGTTGACCCACCATCTGATGACCTCATACCTTTCTGAGAGCAACCTAATTGCCCTATGTCTAAGTTCTTGGGGGCACATCTGCCTGGGTGCCCAGTTGTCACTTGCACCAGCCACTGGCAAGACAGAAATGAAGATGTGAGGTGGGTTATTGTATGGGTCCAAGCAGGGTGGTGGTGCCACCACAGGGAAAGAGTGAGCCCATTGGCCAACAGAGGGGCAAGGTAGCAGAGGACAGAGGCGCGTGGAGATGATCCACTCGTGTTAAGGCACTGTGAACTTAGCAGACCTCTCAGCGGAGGTACCCGGCAGCCTTTTGGATATTCAAGTCTACAGCTCAGGAAGAAAGCAGGTCTGAAGAGAAAGCAGGCTTTGGCTTGGGATCCACCTAACCTGTGAGACATTGCCATCTGGGTGCTCCACAGAATCTCTAATTCAGCATGTCCAAATGAAGTAATTAACAACCCCCTTACACGTGCGTGCACACGCACGCACACACACACACACCAAGGGAAAAAACACAAGCCTACCTCTGCTTCTCATATTGCCTTTCTAAGTACTTTTCTACCCAAGTGTTCACATCAAATACCTGAATTTCCTCAGGATTTCCCTTCACTCCTCTGCCTTCCTACCACCCAGCACCCACACTGATTTACTCATCAGGTTCTGTATTCTGTCACCTAAATAATCTCAGATACATATGTTTTCCTAAGAAGAGTTTCACTGCCACTCCTCCCATTCAATCCTGCATTGGCTCCCACCTATATTACCCTGTCTATCTCCATAACTAGCTTTGCTGCCCGCTTTCTTTCCGCCTTGAATCCATTTCCACTGGGCAGCCTGGTTAACCTTTCCAAAATGCAAATCTGATGGTGTCTCTATTCCCCAGTGTTCCTAGGATGACGCTAAACTCCTTAGCTACCATACAGAGACTCATAATCTGTTCTCAGCTGCAGCCGCTTGGAACCTCTGTTCTTTCAGAGCCATCCAGAGGCCAACGGAGCACTTCTTGGAGTTGTCAGTTTACCGCAGACACCCCCTGTCCCTGGCTGATACAAGAGGAGTAAATCTCTCCTACAACCCACGTGGGAAAGAACTGAACTATATGTGTGTTCCTTGCAACTGTATCTTACAGGTTTTCATAAAATGCCTGTTTTTTTTACTCAGATCTCTTCCCTTTATCACAGCACTCAGTCTTAAGTATTTGAAGAGGCTGGACCAGGAGATAAGCCCAAGTGACAGGCACCTCAGTGGTCTGAAGGTTGTTCTTCCCCTTTGGCTGAGACTTGTTCCTGAGGCAACTCCGTCTGTCCAGGTTTCTGAGTTCCCTTGTGATGAGATGCCCCCGGAAGGCTCCTCGAGTCTCCATACCACAGACTTGGCTAGCCCACCTGGTTGGTTCACTTTTTGCGTGAGAATCTAGTAGCAGCTGCAGGATGGGCTCAACTGCACATTCTACATGACAGCTGGCAAAGGCTGTTGGGCCTCTGTGTTGCCACCCACCCTGGTTGGAACACTTCCAGGGCCATGCGGTCAGATTGCTCACTCGCTTCAGTCTACTCAAGAGTCCCCTTCCGAGAAGCCTGCCCTGGGTGCCCTGGCTACACCGCAGAGCTGCCATTTCCTCCTTGCCCCTGACCTTTCACTTGCCTGGTCCCTTCTGATTTTTTTCCATAGTGTTTATCACTATCTAACAGAATTTATATTTCATGTTTATTTTGTGTCTCTCCCACTGAAGTGAGGGAAGAGATTTCAGCACTCTGTCCTCAGCACTAGAACATTCTTGTGAGCCCAGAACTCAGAAAATATTTGCTAACTGAATGAAGGAAGGAATGCGTAACACCTCACACATGATTAATCTGAGAAACCTGGGCCTTAGCTGTCTTATATTAACATTTTCTGGGACTGAGAGAAAATTCTTTATGTGTTTCATTTAATGAATGTACAACCTCTTTTTAAAAAAATGCTCTTTCTTATTTCCAGAATGATCTCCTTCTTTGTCTCTGCTGTTAAATGTGTTTCTGCAATGCTGAATGGTTGCATTTTTCTAGTCACATTTAGAAAAAAAATTTCCTAAATTCTTTTGAATCCCAAACCCCTTAAATAGAAATATTTGGCTCCAAGACTTCTTGACCATGGGAGAGAAAGTAAATCTATATTAATCATTTTATTATAATACTGCAGAGTATTATCCTGTATCCTTATATACGGGATAACATGAGTGGACGACAGCCAGCCTGCCCAGCCTTAGCTGCTGCTCACACATGCGATAATATAGATCTTATTAAAGACCCACTGTAATTGTAGAATTATTTTATATTCTACACAGATCTTTCTATGTGGACATGGATATTGGACCATTTCTGTCATGTATTAGTTTGAGTGACATTAGACATTGAAGAGGATAGACTGTTAATAGCTTCTAAATGTTCATGTAGTAAACATACATGCAATATGAATTAGGTTGGGGTAGGCATTTATTTCTGCTAACATCACTGGATGTGATGAGCTTTTTTCAGAGTAATCACATAGAAGAGTTTGATTTACTTTTTATTTCTATCAGGGTTCAGAGAGTGGCTTTCATGGGCCTGAAGGTTTAACCTTCCATTTTGTTGCAGTCATGGGAAAATGGAAGCCTGCTGCAGTGGGGAAATACAAGTCAGAAAAAGACTTTATTCTTAATTTGCCATCTTTATGGCCTTTCTCAGAGTACAAAAGCAAAACTACAGTTATTCATTTATGCATAAAACCATTCTGCCTATAATTCTATCTCCTTAAGTGTATCAACTCTTCCCAATTCTATTAAAAATATCAGCAGTAAATTCAGAAATTGTAAAGGCAAAGGCTGATTGTTTTTATTATATACAAATTTTAGAACCTTTACCTGACCATAAAATGGCATAAGCAACATTTGAAAAGAAATTGCAAACTAGAAAAAAAAATGCAGTTTATATGAAGAACTGAAAAATGTGTGAAAGAGAGTTTCACTAAAGATGAAGTTCAGACTTCATAGAAAGAGATCTTTTATGTGTGTTAGGTAGATAGATCCTAATGTAGATTGATAATGTGTGGTGTTTAAGTGGGGGAGAGATGGGTGCTCTCATATGCTGATGTTGAGAATAAACTAATATAGTACAGTCTTCCAGGAGAGCAATTTGGCAACGTAGGGCTGAAGCCTAAGAGTGACTCATTTGCCCCAGCAATTTCACTTCTGGGAATAAATCTTAATGAAATTGCCAGGCACATTCACAGAAATATGTTTCCAAGGTTGTTCATCCAAGTATTGTCTATAAATAATAAAAAATTGGATGCCACATGAATGTTGGTTAAATTTTTTGTGTTATGTAAGTATCTGCCATTAAGTAAAGATGGAGAGCTGTTCTCGTGAGAATGGGAGTATATTCAGAACACTATAAAATAGCATGTAAACCCATCTGCTTTTTCAGTATCTAAAGATAGATGTATCTGTGTGTTTATATAGGCATTTTGAAATTGGGAGTAAAACCTACAAAATGTTGAAAGTGATTTCTTTTAGGTCACAGGATGGGTGATTTCCATATCATCTGTTTACCTTCATGTAATTTCTGATTTTTTACAATAAGAGTGTTCTGTTTTTGTGTTCAGAAAAAATATAACGTATTTCCATTTTGAAGACAGTGAATAGGTATCAACAGCTTCCTTGCCTATAGTAAAAACATTGGTTTTCCCATTCCTCTGAATGGCTATACAGTACTCTGTTTTCTTATCTGCTCTGTCTCTAAATCCCCTTAATACATATGTTGCCCTTAATTTTATTCTTATGTGAATCTTGATTTCATTTTAGTTCCGTATTTTTCTCATGTAGAGAATGGCTTAATTCTCAATTTCTCTGTACCCCTAAATCTTTCTTCCCTGCCCCCAAATTATCTGCCAGATTTTGTCTCTTACACTTTAAATGTGGTTCCCAAATGCAGCTGTACTGCCCAAAATGAACCTTACTGTGGGCATCTTAGTGAAATCAGCCAGTGTTTCTTATCCAGATCTACATAGGATCCTGTTATCTGCGCTCCCTAGGACAAGTTGCAGAGTGTCTTCCTGAGAACCAAATATGACTCATTTCCTTGCATTTAATAATTCATTCGATTATATGTGAGGGCTTCCCAGATGGTGCTAGTGGTAAAGAACCTGCCTGCCAATGCAGGAGACATAAGAAACACTGGTTCAGTCCCTTGGGAAGATCCCCTGAAGAAGGAAATGGCAACCCACTCCAGCATTCTTGCTTGGAGGAATCCCATGGACAGAGGAGCCTCGTGGGCTGCAGTCATTGGGTCACAGGGAGTCAGATACAACTGAAGTGACTTAGCACACACACATGCACAATTATATGAAAACCTTTATTTTGACATGAAAAGCCCTTCGCAGTCAGACCTCTTCATCTTTGCCCATCTTCTGTTACAGCCACTTGACTTCTTAACATTCCTAGAAGAAATGTTTTTCTCACGGTCCTGGCTTTTGTACACCATCCCTTCTTGTGCTTTTTCCCTGCTTCTAACAACTGGGCAACTCTGCATCCTCCAACACCCAGTTAAAATATTATTTCTTCCAGCAACCTTTCCTGACTCCTCTATGGGGATTTGTAGAGTCTCCTTTTTTGCACATTCTTACTGTGTTGTACTGAAACATTTCTGGTTAAGTACTAGCCTCTCCCAACTTCTCAGCCCAACTTAAGATAGAAAGCTACTTAAAGATAAGAGCTGCTTCCCGGCAGTCCTATGTTCTGGCTCATGGGACACTCTAAGGTGTTCATTGCCCATGTACCACATATATTTCCCACGATGACCTCTGCTTTCCATTTGAGCAATATCCTGTTGTTTTTAATTCTTTAATTTTTCTGAAATGTCAAGACTAAATGAAAATTCTGATCCTTTCTCTGTTCTTCTCTTCCTTAG
Seq C2 exon
GCTTCAGATGATGAGTCTTACATCAGTGATGTGAGTGATAATATATCTGAAGACAACACCAGTGTTGCAGACAACATCTCTCGGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405:ENSBTAT00000019160:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.272 A=NA C2=0.650
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]