RnoINT0105810 @ rn6
Intron Retention
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63433679-63438804:+
Coord C1 exon
chr3:63433679-63433816
Coord A exon
chr3:63433817-63438716
Coord C2 exon
chr3:63438717-63438804
Length
4900 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TTCCTTCCTTCCTTCCTTAGGCT
3' ss Score
12.29
Exon sequences
Seq C1 exon
CCTGGTGAGCAGATCCACGCCAACCTCCCCCTGTCACAGCAGGTGGTCAACGAGAGCCGCCTCTCCATGTCGGAATCCGTGTCAGAGTTCTTCGATGCCCAAGAGGTGCTCCTGTCTGCGAGTTCATCGGAGAATGAG
Seq A exon
GTGGGTTCCTGGCTGTGTCCGTCTCATCTGCTTGCAACTGTGGGCAAGCCCATAAGACTCTGGGACTCTGAGCCATCCTGTGGGTTTATGTCACAGGAAGATGCTCACATTAAAAGCAGCACCAAAAGTGTGTAAGCCATGGTGCTTCCCGTTCCCTAGGCACATGAAAGCATTTCTGGGCTGAAACTCTGGGCTCTTGACTTGGATGAATAAAGGGAAATGATCAAACATATGTACCAAACCAGTGGTAACTGAGGTCATTGCAGGGGGCCGTTTGGTAAGGCGGAAAGGATGTGAGAATTAGAAAACCACTTTCTGTTGGGTGATTTAATAATTCTGTAAGACAAATCTGAACACATCCCAGTCCCCAGTATTCTTAGAATAACAGTTTATCTGTCACACAAAAATGCTAATAATCTGACCTCTGTACTCAGGTGTAGCTTCGTGTTCCTTTGTGTTCTAGATCCTTCCAGCAGCCAAAGGAGTGATCCCTGGAGTTGTCAGTTTGCTAAAGACACCGTATTGTCTCTTGTTATAACAAAGAGAAGTAGTCTTTCAAGTGACCCACACTGGAAAGAACTGGACTGCGTACCTCCCCTTGTGCCCTGTGTTTTAGAGGTTTTCAGAAAAACAACTGCTTTAGTCCCATCTTCTTCCTTTACCACAATACTCAGAACTAGGCCAAGAAATAAACTCAAATGATAGTCACCATCATGTTCTCAGAGTTGTCACTTCCTCTTCTGTTAAGGGCTTGCTCCTGGATCAGTCTAACCTGCTCCAGTCTCTTAAGCGTCTTAAGTGAGAACCATCTAGAAAGCTCCTCCAGCCTTCACACTAACACACTTGGCAAGCTCACCCCATGAGTCCAGCATTGGTGTGTGAACTCCGGTCACAGCGGCAGAGTACATGCAGCTGTGTTCTATGCTGCCATGGCCAGCGGAGACAGGGTCCTCTGCACTTGGCACCCATGCTGTCTGGAGAGTTTCTCCCAGAAATATGGATGCTAGCTTCTCCCACATGTACAGTCTGATTCCTTCCTCAGAAGCCACCTTGATAGCTAGCCTGCCTGCAGTGAAGTGTTGTTTCCCTCTCTCCCCTAGCCCTCAGGATGCCTTGTTTCTTTTTCCCTCCCAGCTAGCACTCCCCAACATAGTTTGTTTCCTCTATTTCACCTGTCGTGCCTTGTTTCTTTTTCCCTCCCAGCTAGCACTCCCCAACATAGTTTGTTTCCTCTATTTCACCTGTCGTTTGTGTGTTTCCACCTCTAAAATGCAAACCCCACAATAGAGACGTCACCGTTTTGTCTCTAGAACAGTCCAGCGAAGTCACTAAGTCTTTGCTAACTGAATGAAGGGAGGTGTTCTTTCGGGCCATTCACCCACAATGCTTCTGAGAGGTGTTCACACCAAAATTTACCTGACTGGGGATATGGTAGCAACCAGTGCATTTACTTAACCAGTCCTCAGAACCTTTTCAGAAAATTGTCTACTAAAAGCTACATCATTTTTTTTTAAAATAAAAGATGGCCATACTTTCCAGAATGATCTACCAGCCTAGTGTCTGCTTTAAGACTTGTGTCTGCAGGGACGTACCTAATCGCATTTAGAAAAGGAGTTCCTGATTTATTTTTGAACCCTGAAGTTCGGAACCAAAATATTTGGCTCCAGCACTTTTAGTTCTCAGGGAAGATGCAGGCCTTGGTAACGACCCAGGATCTTGGTCTGTGTGTAGGACATGTGAGAGGACCACAGTAAACAGCCCAGCCCCCAATGCTGCCACACACAAACGTGGGATGTACGTACTTCTGACTCATGTCCATGGTCACTGCAGAATTCTACACGAAAGATAATGTACCATTTATGGCACAGTAGTTTAGGAGAAATCAGAAACCGAACAGTGTGCTTAAGCATGGCAGTTTCCTTAACAAATGCTAACAATGAACAAGATTGCAATATACATTTAATTCTGGTCGGCACTTGTCTCCTTGGCTGCAATTAAGTGAGATTAGCCTCTTTTAATGCAGCGGTTCTCCACCTGTGAGTCTCAACCCCTTTGGGGGTTGAACCACCCTTTAACAGGGGTCCCATATAGATATCCTGCATATTGGATATTTACATTAAGATTCATAATAGAGCAAAATTATAGTTATGAAGTAGCAGGGACAGTAATTTGGGAGGTTGCCACAACATGAGGAAGTGTATTAAAGGGCCGCAGTGTTAGGAAGGTTGAGAACCACTGTTTTAGAGAAATTGGGAGGAAGAGATTGATTTGCCTCTTTTTCCCTACAAGCTAATGAGCTCAGCTTCCCCGGGCCCAGTCACGTTCCCCCTGGCTCTCTTGCAGCCTGTGAGAACCGTGGAGACCAAGTAAAGGGCAAACACATGATTCAAAAAAATATTTTTTCCTCAATTTGCCATGTCTATAAACCTATATGCAAAAGCAAAAATCCTATTACCTTAACCCATATGTACAGTCCTGTGAGGGTATCATCTGAAATATATGAACTCTGTAAGCGAATATGTCAACTCTTTTCAGCCCTGATATTTAGTTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTTGTATGTGCATGACTTTGGGTGTTTCTTTGTATGCATACACATGTATGTATAGAAGCCAGAGATCAACTTCCAGTATCTTCTTCACTTTCTCTCCATCTCAGTTTTTGAGACGCATTCTCCCCCTGAGCCCTGGTGTTAATTGACTTCGTTAGGCTGCCTGAGGACTCTGTCTCCTCTCCCCCATTTCAGCTACATGCACCACATCCAGTTTTTACATGGATGCTAGGAATCTGATTTCAGGTCCTGTATGCTTGTACAACAAGCACTCCGCTGACAGATCGGCCCTTCAACCCTAAAAGTCATCAACAAATATGGAAATGTGTAAAAATTAAAAATGAATTAAAATATTTTAGCAGTACCGGAGATCAAGCCCAGAGCCTTATGTGTGCTAGGTACAAACTCTCTACCACTCAGCTGTGCCCTCCGCCCCCCGATAGTTCTTATTTTATTTAAATTTAAAACTTTGAGTAGCAAAATGTTGGCACAAGCACGTTTTAAAAAAGAGAAGTTGCAAACCAGGAATTGCAGTGCATAAGATAACAGAAACATGTTGAGAGACAAGCAGGTTTACAAAGAGCATACCCGAACATTGTCTGTATTGGAGGCACCTGCGTGCTGGTTCGTCTCTGTGTGTCATCAGTGAGCATCGAAGGCGCTGGCCTTCCCAACACAGATGAAGAGCTTCATCTCTTGTAAGGCAAGATGTGTTCAGGACACTGCAGAACTAGAGACCCAGACATGCTGAGCATAACCGCAATCCCAGCATTTGGGAAGCACAGGTAGGAGGCTCACCGCAAGTGGTCCAGCTTGTTCTGCATAATGAATTCTGGGCTAGCCAGAGCTATGTAGAAAGACCCTCAAGGCACCAAAACGAATGGTCAAACCAACCCCAATCCTCTTTGCTAGTAGTGAAGAAACATGCAGCATGTGTCTAAGTTGGGGGGATGAGGCCTACCTGAATGGTCCTGTAGGTGATGGCAGTGCAGTTGACTTTTAAAATCGGTTTGCCCTCCCTCTTGGACTTGCTAATATTTTTACAGGAGGGATGTTTTGGTTTTAAATACCACCGTTTTCACTTTGAAGACGGTAAAGAGCGTTGTTTTCCTGTCTGAAGTTGAGGCCTTGGCTTCCCAATTCCTAACTGTCCCAGTGCTCTTACTTAACTGCCTGGATTCTGTACATCACATTGCTCCTTAATTTAATTTTGCCCTCAGTTGGGGTTTCACTTTAGGTTTTTGTTCACTTATTTCCGCAGTATTGAGGATTGAACTATGGCTTACGCACACTAGGTAGACCGCCCACCACTGAGCTGTAGCCCTACACCCCGCTGCTTTCATGGTTGCTCCATTAGTTTTTCTCGGGAAGAGAATGACTTCATGTTTGATCTCTCGCCATCCTCCTACAAGTTGTCAGGCACTAGGCTACTAGGACTTGTTACTGGAACCTGTGTAGCATCTGCTCATCTCAGCTCCCTAAAGGAAGCTGTAAGCATCTTGTGGATAACTTAAGTCTGACTCTGTGTGGACTTCCTTGCAGCTTCTTGGATTTTAATGACCCTTCAGGTTGTCCGAAAAACCTATCGTCACCACCGTGCCTTCTTCTTGTCTCCCTGCGCTTGGCCACAGACACTCTTAACTTCCCAGCAGTCCTTGGGAATGTCTCCCTAATTGTTCTTACCTGTGCCTCTCCCTCCTTCCTGTGGTGCTTCTCTGTCTCATAGTGACTGGGCAACTCCTGTTCTTTCTTTGACATCTCCCACACCCTCTGCTCAGTAGCACTACTCTGGGCAGCCTATCTGGAATCCTCTGGGTAGAGGCCCATGCTTTCCTTCATGTATATGTGTGTGCACTGTGTTTTCCTGAATTAAGCATAACCACCTCCACCCCACCCCCAGCTTCCCAGCTTGGCTAAGATGAGAGCTATTTTTTGTTTTGGATTGGTTTTTGCTTTTTTGTTTTTTCGAGAAAAGTTTCTCTGTGTAGCCCCAGCTGTCCTAGAACTAGCTTTGTAGACCAGGCTGGCCTCAAAGTCAGAGATCCTCCTGCCTCTGCCTCCCAAGCGCTGGAATGAAAGGCGTGTGACGCTGCCACCGAGGAGCTACTTCAAAGCAGAGGTTCCTCTCTAGCATCCTGTAGAAGTCACCCAGGTATTCTTTGAACATATCCAAGTAGACTTTCCCTGAGATATCTGCTGCTCATCTGAATAAGAGTTTGCTACTTTTAACCCTCTGGTGATCTGAGCTCTTGAGGCAAGAGTCCTAAGAAGCTCTCTCACCACCTCCTGGCCCTTCCTTCCTTCCTTCCTTAG
Seq C2 exon
GCTTCCGATGACGAGTCCTACATCAGCGACGTGAGTGACAACATATCTGAGGACAACACCAGTGTCGCCGACAACATTTCTCGGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812:ENSRNOT00000068199:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=NA C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]