GgaINT0047058 @ galGal4
Intron Retention
Gene
ENSGALG00000009172 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr7:14942661-14943923:-
Coord C1 exon
chr7:14943786-14943923
Coord A exon
chr7:14942746-14943785
Coord C2 exon
chr7:14942661-14942745
Length
1040 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
TGATTTTATTTATCTTTTAGGCT
3' ss Score
9.92
Exon sequences
Seq C1 exon
ACGGGTGAACAAATTCATGTCAGTTTGCCATTGTCTCAGCAAGTTTCCAATGAGAGCAGGCTCTCTATGTCTGAATCAGTGTCAGAGTTCTTTGATGCACAGGAGGTGCTTTTGTCTGCCAGCTCGTCAGAAAATGAG
Seq A exon
GTAGGCTATAACAGTGTACTGCAGCTTTGCTGTCAGACAGATTCAGGTATTGATGTCACTAGTGAATGGTTATTTTTAATGCTATTTAGAATAAAAAGGTATCAGAATGCATAAGGTTTAGATAAATTTGCCTGAGACTCATTTGAGATGGGCTGCAGAGGTTCTCTGAAGTGTAAAACTTATCTGGAAGTTGTATCAGTAGTATATGTTCAGTACATGTTCTTACTAGACTATGTCAGTTTTAGGCAATGATGACAGCAGCAATTAGGTCTGACTATGTGGTGAACTAATTTAGATTTTAAAGTTTTCATTAAAAATGAAACAAAGTTCTTCTATCATATTTAGTAAGTTATTCTCTGTAGTCAGAGAAGTAGACAAGTGTCAAAAATTCTCTCATTGAAGCTCAAAGATGACCAGTGGGAGGCAGTTGGGACCCTGCATCATGTGGCTGCCCACAACTTTCCCATGGTATTTGAGCTAACTGAACAATATTTTACGGATTGGCACTTCGGTACCACATTGGAGATGTGCAGAAGACAGAGATAAACAATTTTTATTTAATTGTTCTGAAGAAGAAGAGTAAAAAAGAATTTTACAAGTAGTTTTAACACTGATGTAGTTCTTGTTTTTCAAAATGATAGGTCAGTGTCTGTTCTTGTTTCTGCTGAAATGTAAACTACGTTTTAAAGCTTGATTCTGTATAAAAAGCACAAGTCTGACCATCTCTCCTCACCTCCTAGTGTGTTATGCTGTCATTTTTTAGTTCTTTTGATCTCATTTGAAGTCACCCTTTTGTAAATGTAATATCTGTGTTTGGCTTCATAATAAGCAATGCAGAAACAGGAGGAGAGAATAGAATTTATTTTGACGCTGTTGGTGCATTGGAAGTATGGCTGATTGAAACCTCTAGATGGTTTAGTTAAAATCTCTAATTGGGTACCGGTGATGTATTTGAATATTTTTGTTTCAAGTAATTGTTTGTGTAATTTTTTAGTAAACCTTATATATATTTGAATAAATTGATTTTATTTATCTTTTAG
Seq C2 exon
GCTTCTGATGATGAATCCTATATCAGTGATGTGAGTGATAATATATCTGAGGACAACACCAGCGTCGCTGACATTTCTCGGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172:ENSGALT00000014942:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=NA C2=0.655
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGTGAACAAATTCATGTCA
R:
TTTGCCGAGAAATGTCAGCGA
Band lengths:
223-1263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]