MmuINT1026025 @ mm10
Intron Retention
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:97058460-97059192:+
Coord C1 exon
chr11:97058460-97058597
Coord A exon
chr11:97058598-97059098
Coord C2 exon
chr11:97059099-97059192
Length
501 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTGCAATTCTTCCCGCCCAGGGT
3' ss Score
5.93
Exon sequences
Seq C1 exon
CAAGAAGCTCTGTACATGAAAGGCCGAGAGCTGACCCCCCAGCTGTCGCAGAGCAGTGTGCTGTCCCTCGCCGACTCCCACACCGAGTTCTTTGATGCCTGTGAGGTGCTCCTCTCTGCCAGTTCTTCCGAGAATGAG
Seq A exon
GTGAGGGAGGAGGGAGCATCAGGAGAGGGAGGAGGGAGCATCAGGAGAGGAGGGACTTCTCTCCTGCAGGATGGGGGTGGGGCCTGGACATTCCTGGGTCATTTCTCACCACCTTAGCAGCCATCTCTGAGAGCGTACCCAGCTCTGTTAGATTTGTGTGACTCTAGAAACCTCTTCTCCTTGTTGGACATGCCTTACCTGTCTGCTCTCTGAAGTTATCCTTCCTGGGACCCCCTTTCCATGTTCATGCTTCTTTGACCCAGACTCTGGATCTCCGCGCCACCATCAACTTCTCTTCCCTCTGTGTCTCGCCAATTTCCCAGGCTCTTTGCTATAAGTCGGTACCCGTCGTGACAGGATGTTGTTGTTATCTTAGGGCTAAAAGTCCTCCCCTCCCTGTCATCCTTCTTTCCACCAAAGGGCTAGGGTTTTATCACATTCTTACCAGGTCCTGGGCATTGCCAGTCTGTCTACCCCTACCTTGCAATTCTTCCCGCCCAG
Seq C2 exon
GGTTCTGAGGAGGAAGAGTCTTGTGCTAGCGAGATCACCACCAGCCTGTCTGAGGAGGTGCTGGATATCAGGGGAGCTGACCGCTATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534:ENSMUST00000090020:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.358 A=NA C2=0.518
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTCTGTACATGAAAGGCCG
R:
TCAGCTCCCCTGATATCCAGC
Band lengths:
214-715
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types