HsaEX6023321 @ hg19
Exon Skipping
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:16387]
Coordinates
chr17:45891887-45893568:-
Coord C1 exon
chr17:45893473-45893568
Coord A exon
chr17:45892581-45892718
Coord C2 exon
chr17:45891887-45891980
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCATCTGGCTGCTCCCACAGCAA
3' ss Score
6.72
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTCTCTGAGGCCTCCACTGGCCAGAGGCGCCTCCACTCACTGTCCACCTCCTCCGACACCACGGCGGACTCTTTCAGCTCCCTCAACCCTGAGGAG
Seq A exon
CAAGAAGCTCTGTACATGAAGGGGCGCGAGCTCACCCCCCAGCTATCGCAGACCAGCATCCTGTCCCTTGCTGATTCCCACACGGAGTTCTTCGATGCCTGCGAGGTTCTCCTCTCCGCCAGCTCTTCTGAGAATGAG
Seq C2 exon
GGCTCAGAGGAGGAGGAGTCCTGTACCAGTGAAATCACCACCAGCCTGTCTGAGGAGATGCTGGACCTCAGGGGAGCTGAGCGCTGTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025-'12-14,'12-12,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.435 C2=0.535
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(31.0=100)
A:
PF0010425=Hormone_recep=PD(7.0=15.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTGAGGCCTCCACTGG
R:
CCCCTGAGGTCCAGCATCTC
Band lengths:
170-308
Functional annotations
There are 1 annotated functions for this event
PMID: 15212954
This event
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: glutathione s tranferase tag, pull down. ELM ID: ELMI001273; ELM sequence: DSHTEFFDACE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)