GgaEX1041435 @ galGal4
Exon Skipping
Gene
ENSGALG00000028934 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr27:3904773-3905914:+
Coord C1 exon
chr27:3904773-3904897
Coord A exon
chr27:3905281-3905412
Coord C2 exon
chr27:3905825-3905914
Length
132 bp
Sequences
Splice sites
3' ss Seq
GAGCCCTGCTGTCCCTGCAGCCC
3' ss Score
8.21
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
Exon sequences
Seq C1 exon
TGCATGACTCGCTCAGCAGCGTGGTGACAGCGCTGACGGCTGAGAGGGCTCGCCTGGAGGACATGCAGCGGGCGTTGGATCGCCGGCGCTCAGCCCCACGCCCTGGCAGTGCCGGCCCCACTGGG
Seq A exon
CCCGACGTGCTGCCTGCCAAGGGCCGGGAGCAGCAGCGCTCGCAGCGCAGCATCGCCTCACTGGCCGACTCACACACTGAGTTCTTCGACGCCTGTGAGGTGTTCCTCTCTGCCAGCTCCTCTGAGAATGAG
Seq C2 exon
GCGTCGGACGATGAGTCCTGCATCAGTGAGGCCACCAACAGTATTGATGAGGACCTGGCCGAGCCGGGGGGCCTGGACGTCCCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028934_MULTIEX1-2/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.523 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGACTCGCTCAGCAG
R:
CTGTTTGGGGACGTCCAGG
Band lengths:
215-347
Functional annotations
There are 1 annotated functions for this event
PMID: 15212954
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: glutathione s tranferase tag, pull down. ELM ID: ELMI001273; ELM sequence: DSHTEFFDACE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]