RnoEX0062536 @ rn6
Exon Skipping
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:84991689-84993524:+
Coord C1 exon
chr10:84991689-84991784
Coord A exon
chr10:84992859-84992996
Coord C2 exon
chr10:84993431-84993524
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCTCCATCTGGTTCCCACAGCAA
3' ss Score
8.2
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTTTCTGAGGCTCCGGATGGTCAGAGACGTCTCCACTCACTCTCCATATCCTCAGACACCACAGCAGACTCCTTCAGTTCCCTGAACCCGGAGGAG
Seq A exon
CAAGAAGCTCTGTACAGGAAAGGCCGGGAGCTGACCCCCCAGCTGTCCCAGAGCAGCGTGCTGTCCCTCGCTGACTCCCACACCGAGTTCTTTGATGCCTGTGAGGTGCTCCTCTCTGCCAGTTCTTCTGAGAATGAG
Seq C2 exon
GGTTCTGAGGAGGAAGAGTCATGTGCTAGTGAGATCACCACCAGCCTGTCTGAAGAGGTCCTGGACATCAGGGGAGCTGACCGCTATCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473-'12-21,'12-20,14-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.812 A=0.413 C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGAGGCTCCGGATGGTC
R:
TCAGCTCCCCTGATGTCCAG
Band lengths:
175-313
Functional annotations
There are 1 annotated functions for this event
PMID: 15212954
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: glutathione s tranferase tag, pull down. ELM ID: ELMI001273; ELM sequence: DSHTEFFDACE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]