BtaEX0025491 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013523 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr19:39258388-39259925:+
Coord C1 exon
chr19:39258388-39258483
Coord A exon
chr19:39259123-39259260
Coord C2 exon
chr19:39259832-39259925
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACCAGTCTTGCTCCCAACAGCAA
3' ss Score
7
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTCTCTGAGACTTCAGCCGGCCCGAGGCGCCTCCACTCGTTGTCCATCTCCTCCGACACCACTGCAGACTCCTTCAGCTCCCTCAATCCCGAGGAG
Seq A exon
CAAGAAGCTCTGTACATGAAGGGGCGAGAGCTGACCCCCCAGCTGTCCCAGAGCAGCGTCCTATCCCTTGCTGACTCCCACACAGAGTTCTTTGATGCCTGTGAGGTTCTCCTCTCTGCCAGCTCTTCTGAGAATGAG
Seq C2 exon
GGCTCGGAGGAGGAGGAATCGTGCACCAGTGAAGTCACCACCAGCCTGTCCGAGGAGGTGCTGGATCTCCGGGGAGCCGAGCGCTGTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013523-'10-13,'10-11,12-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.844 A=0.413 C2=0.438
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGACTTCAGCCGGCCC
R:
CTTTCTGACAGCGCTCGGC
Band lengths:
186-324
Functional annotations
There are 1 annotated functions for this event
PMID: 15212954
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: glutathione s tranferase tag, pull down. ELM ID: ELMI001273; ELM sequence: DSHTEFFDACE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development