MmuEX6089168 @ mm10
Exon Skipping
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:97056528-97059192:+
Coord C1 exon
chr11:97056528-97056623
Coord A exon
chr11:97058460-97058597
Coord C2 exon
chr11:97059099-97059192
Length
138 bp
Sequences
Splice sites
3' ss Seq
CACCCATCTGGCTCCCACAGCAA
3' ss Score
7.3
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTTTCTGAGGCCCCGGATGGTCAGAGACGCCTCCACTCACTCTCCATCTCCTCAGACACCACGGCAGACTCCTTCAGTTCCCTGAACCCGGAGGAG
Seq A exon
CAAGAAGCTCTGTACATGAAAGGCCGAGAGCTGACCCCCCAGCTGTCGCAGAGCAGTGTGCTGTCCCTCGCCGACTCCCACACCGAGTTCTTTGATGCCTGTGAGGTGCTCCTCTCTGCCAGTTCTTCCGAGAATGAG
Seq C2 exon
GGTTCTGAGGAGGAAGAGTCTTGTGCTAGCGAGATCACCACCAGCCTGTCTGAGGAGGTGCTGGATATCAGGGGAGCTGACCGCTATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534-'19-18,'19-17,22-18
Average complexity
S
Mappability confidence:
89%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.760 A=0.358 C2=0.518
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTGAGGCCCCGGATG
R:
TCAGCTCCCCTGATATCCAGC
Band lengths:
176-314
Functional annotations
There are 1 annotated functions for this event
PMID: 15212954
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: glutathione s tranferase tag, pull down. ELM ID: ELMI001273; ELM sequence: DSHTEFFDACE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types