MmuINT0115080 @ mm9
Intron Retention
Gene
ENSMUSG00000021223 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:MGI Symbol;Acc:MGI:2386139]
Coordinates
chr12:85127719-85130271:+
Coord C1 exon
chr12:85127719-85127827
Coord A exon
chr12:85127828-85130104
Coord C2 exon
chr12:85130105-85130271
Length
2277 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
CGATGTTCTCTCCCCTCCAGGAA
3' ss Score
11.82
Exon sequences
Seq C1 exon
GGGAGCTGACAATCACAGGCCTGCCTCCTGCTGTGACCGTGGCAGAGGGTGACACTGCCAGGCTTCTGTGTGTGGTGGCTGGAGAAAGTGTGAACATCCGGTGGTCCAG
Seq A exon
GTAAAGTGGTACTGCAGACAGCGTAGTCAGTAGAGTCTCACTCTGTCAGAAATGTCACTGTCAACACTGCCCCTATGCCATGCTCTGAGGCCTAGGGCCAGGGCTGGAGGCTGCAGCCTCTTCCTACACCACAGAGCTCCAGAGAACAGCTTTCCCATTGGCTGGGCTGCCGTTTCTTTTTCTTTTCTTTTTCTTTTTCTTTCTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGTATAGACCAGGCTGGCCTCGAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTATGCTACTACACCAGGCACTAATTTCTTAACCTTAGTATCACTGAAATATTGGACCAGACAAACTTGCTGTTTTAGGCTTGTGCATGGTAGGCTTGGCAGCATCTAGAACATCCACTTGCTAACAGTAGTATTCTCTCTGTCCAGGTTAAGACAGTGAACAGAATTTCCAGACATGGCCGTTTCCTCCATATTGAGACCCTCAGGGCTGCATGCAGCTTTGGAGTCTTCAATGATTTTTTTTCCAAATGTACTTATGTGTATGAATGTTTTGTTACATGTGTATGTGTACAACATATAGGCCTGGTGCCTATGGAGGGTGAGAAAGAGAAAGAAAAGGGGTCGGATCTCCTGGAACTGGGGTTACAGATGGCCGTGAGCCACCATGCAGTTGCTGGAAACTGAACCATGGTCCTCTGCAAGAATGAGTTCTTAACTGCTAAGCCATCTCTCTGGCCCCAATTTCAGTGAACTCTGATCCAAACTGTACCAGAACTTAGGTTACTGTTTGGAGACCTGGGGGTCACTTGGACTCAGTCCACTATGAGCTGAGAGATGGTCCAGGTTTCCCTCAGGTGCTGACTGTGCATAAAGGAACGTAGTAAGGCTTTGGATCAGGGAGAATCGGGGAAGAGACCAGGGAGGGAGCAAGAGGGAGATGCTCTTGGGAGGAGTAACAAGTGGCCAACAGCGAGCATTTCCAGGAGAGATGCATTGGTGGGATGGGTGATAGTGACAGTGGTGGTCAGGTGCCTCTTAGATGACCTTGATGCCAGGGGCTTCAGTGCTCAGAGTCCCCACTTGGAAGCATGGGGACATCTTGCTGTCTCTACTGATCATTGCTTTATCTACATCTGGCTCCTGCTCTAGGGGACATGGTACTGGAGAGGCCACCAATCACCTCCCTGCCCCTCCCACCACAGGATGGTCTCAGTCTTTCCCTCATCTGTGGTGACATCCTACTGGCCACTTGCTTTTTTTTTTCTCAAAACACTCCCTTCCCAAGGCTTCCCTAGTGTCCTCAGAGCTGTCACCTGAACAGCTTTAGAGACGTACCCATCCACATGTGCAAATGATACACTTCTGGGTCCGGACTTTGCGGCTCCAGATCTCAGACTTAACATCTCACAGCTATCTCAGACTCAAAGCATCACCTCACTGTTCACTCCTTTCTACTCATCAGTGAGTGATGTGAGTGAGTGAGTGGCGGGCATCAGCGAGCTGAGACCTAGTCATCCGTTTGCCCTCTTGGGGAGAGGAGGTAGGTCCTAGAACCACCATCGCCCAGTGACCAAGCCGTCTGGTTTTCTGTCTCCACCTCCTACATCTGACCTTCACTGTCTGTATACTTCAGTGTCCTGTCATCTTCTCTGTGTGCACGAAGCAGCACCTGCTCACTGCTTGCCCTTATTCCAGGGCACCCCACCCAGACCCTGCTCCCCTCAAGCCCCCAGCCACTCCCATTGCCTGCTTAAACATTTGCTAGGAACTCAAGAGTCCTGACTGGCTCCCTCTGCCTTCTTGCTTTGACAGTGACAGCTTGTCCTCAAGTTCCCAAATCCCCACAGTCCTCTTCCACTGGCCAGCCCTGCTGCGGTCTCCTCTCCTCACGTCAGCTGCCTCTTTCTTGTGGGAGGCTCTCTGGACACTGGCAACCTCTCCTGTGCCATGAAGGCACATGTACCCTTCCCCTGACCCTGGGGCCTGGCATTTGTCAGTGACCAGCTGGAGTGGGCTCCTTTGTGGATTCAGGGCAAATTGTAATGAGTGAGCTGAGTTGTGCCACTGGCTTTTAATGTCCTCCTACCAATTGAGTGCACCTGTCCCCTCTTCCCTGAGGTGTCATCTACCCACCCTCATGGGGAGAGAAGGTTAGCTCTGGAATAGCCTTGGCTAATGTCTTTCTCCTCTTCCAGGCCTCTCAGGGCGTATCTCTCCCGATGTTCTCTCCCCTCCAG
Seq C2 exon
GAATGGCCTGCCAATACAGGCCGACGGTCACCGTGTGCACCAGTCCCCAGATGGCACACTGTTGATCCACAACTTGCGGCCCAGGGACGAGGGCTCTTACACATGCAGTGCCTTCCGTGGGAGCCAGGCTGTGAGTCGCAGCACCGAGGTGAAGGTGGCCCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021223-Papln:NM_130887:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.158
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(39.1=91.9)
A:
NA
C2:
PF0767911=I-set=PD(59.8=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: