RnoINT0107097 @ rn6
Intron Retention
Gene
ENSRNOG00000009448 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:RGD Symbol;Acc:1311176]
Coordinates
chr6:107270902-107273502:+
Coord C1 exon
chr6:107270902-107271010
Coord A exon
chr6:107271011-107273335
Coord C2 exon
chr6:107273336-107273502
Length
2325 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CAATGTTCTCTTCCATCCAGGAA
3' ss Score
9.2
Exon sequences
Seq C1 exon
GGGAGCTGACAATCACAGGCCTGCCTCCTGCCATGACGGTGCCAGAGGGTGACACTGCCAGGCTTCTGTGTGTGGTGGCTGGAGACAGTGTGAACATTAGGTGGTCCAG
Seq A exon
GTAAAAAATTACTCTAGTCAGTTTCATTCTGTCAGAAATGCCACGGTGCTCTGAGGTCTAGGGCCAGGGTTGGAGGCTGCAGCAACCTCTTCCTACACCACAAAGCTCCAGAGGACAGTTTTTCCACTGGCTGGGCTACAGTTTCTTTTTCTCTTGGTAATTTTGAGACAAGGTTACACTTTGTAGCCTGGGCTGGCCTGGAACTCTGTAGATCAGTCTGGCTTCGAACCCAGAGATCTACTTGACACTTCCTCCTAAGTGTTGGGATTAAAGGTGTATGCTACTACACCAAGCAATGATTTCTTAATTTTAGTATCACCAAAATATTGGATCAGACAAACTTGCTGTTTTAGGCCTGTTCTAGCAGCATCCTGAACGTCCACATACTAGAGCCAGTAGCATCCTCTCTGCCCAGGATAAGTCCGTGAACAGAATTCCCAGACATGGCTGCTTCCTCCATATTGAGACCCACGAGGCTGCACGCAGCTTTGGTGACTTCAATGTTTTTCCCAAATGTATTAATGTGTATGTGTACAACATACATGTCTGGTGCCTATGGAGGTGAGAAAGAGAAAGGGGGAGGAGCCGGAGCTCCCAGAACTGGATTATGGATGGCTGTGAGCCACCACGCAGTTGCTGGAAACTGAACCGTGATCCTCTGCAAGGATGAGTTCTTGACTGCTAAACCAACTCGCCAGCCCCGACTTCAGTGAACCGATCCAAACTGCATCAGAACTTTGGTTACTGAGATTTGTCTGGAGATTTGGGGGTCACTTGAGCTCAGTGCACTATGAGCTGAGAGGTGGCCCTCAGGTTTCCCCTAGGTGCTGACTGGGCATAAAGAAAAGTAAGGCTTTGGATCTGGGAGTCAGAGAAGCAGCCCAGGAGGTAGAGAGAGGAGACGATGCTCTTGGGAGGAGTAACAAGTGGCCAACAGCAAGCATCCTGGAGGGATGCATTGGTGACAGTGATGCTGTTGCCTCTCGGGTGGCCTTGATGCCAGGGGCTTCAGTGCCTGCTTACACAGTCCCCACTTCACAGCATGGGGACATCTTGCTGCCTCTCCTGATTGTTGTTTTATCTACATCAAGCCCCTGCTCCATCAATCGCTTCCCTGCCCCTACCACCACAGGATGGTCTCAGTCTTTACCTCATCTGTGGCGATGTCTTACTGGTCATTTGTTTTCTCAAAACACTCCCTTCCCATGGCTTCCCTCGTGTCCTCAGAGCTATTGCCTGGACAACTCTGGGGACGTACCCTTCCATGGGAGCCGATGATATACTCCTGGGTCTGGACTCTCCAGATCTCAGACTGGACATCTCACAGGCACTTCAGATTCAAAGCACCATCTCACTATTCACATCTTCTCGCTTGGAGGCCATCAGTGAGCTGAGACCTGGTCACCTGCTTGTTCTCTGGGGAGAGGAGGTGGACCCCAGAACCGCCATTGCCCAGTGACCAAGCTGTCTGCTTGTCCCCACCTCCGACACCTTTCATTGCTCTACACTAAAGTGTCCTGTCATCCTGTCCATGTGCATGAAGCAGCACCTACTCCCTGCTTGCCCTTCTTCCAGGCCACCCCAGCCAGTCCCTGCTCCACTTGAGCCCCCCAGTCACTCCCATCGCTAGCTTAAACATTTGCTAGGAACCCGGGATCCTTACTGGCGCTCTCCACTTTCTTGCTGTGGCTGTGAAGTTCCCAGATGCCCACTTTCCTCTTTTGTTGGCCAGCCCTGTTGCTGCCTCCCCTCCTCAGGTCAGCTGTCTCTTTGTGGGAGGCTCTCGGGACACTGGCATCCTCTCCTGTGCCATGAAGGCACATGTTCCTTTCCCCTGACATGGGAGCCGGCATTTTTCAGTGACCAACTGGCGCTCTCCACTTTCTTGCTGTGGCTGTGAAGTTCCCAGATGCCCACTTTCCTCTTTTGTTGGCCAGCCCTGTTGCTGCCTCCCCTCCTCAGGTCAGCTGTCTCTTTGTGGGAGGCTCTCGGGACACTGGCATCCTCTCCTGTGCCATGAAGGCACATGTTCCTTTCCCCTGACATGGGAGCCGGCATTTTTCAGTGACCAGCTGGCGTGGGCTCCTTTGTGGATCTAAGGCAAACCTGTAGCTCTGAAGAGTGTGCTGAGTTGTGCCACTTTGCTTTTCTCCTACCAGTTGAGAGCACCTCTTCCCTCTTCCCTGAGGTGTCAGCTGCCTGCCCTCATTGGGAGAGAAGGTTAGCTCAGAACAGCCTTGGCTAATGTCTTTCTCATCTCCCAGGCCTCTCAGGGCATGTCTCCACAGGCCCTGGATGGCTCTCCCAATGTTCTCTTCCATCCAG
Seq C2 exon
GAACGGACTGCCAATACAGGCTGATGGCCACCGTGTGCACCAGTCCCCAGATGGCACACTGTTGATCCACAACTTGCGGCCCAGGGACGAAGGCTCTTACACATGCAGTGCCTTCCGTGGGAGCCAGGCTGTGAGCCGCAGCACTGAGGTGAAGGTGGCTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009448:ENSRNOT00000012757:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=NA C2=0.211
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(39.1=91.9)
A:
NA
C2:
PF0767911=I-set=PD(59.8=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]