MmuINT0115831 @ mm10
Intron Retention
Gene
ENSMUSG00000031860 | Pbx4
Description
pre B cell leukemia homeobox 4 [Source:MGI Symbol;Acc:MGI:1931321]
Coordinates
chr8:69866468-69870182:+
Coord C1 exon
chr8:69866468-69866603
Coord A exon
chr8:69866604-69870028
Coord C2 exon
chr8:69870029-69870182
Length
3425 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTCGGTCCATCTATCCACAGGTC
3' ss Score
10.48
Exon sequences
Seq C1 exon
GCGCAAGCGGCGGAATTTCAGCAAGCAGGCCACAGACGTGCTGAATGAATATTTCTATTCCCATTTGAGCAACCCTTACCCCAGTGAAGAGACCAAAGAAGAGCTGGCCAGGAAGGGTGGCATCACAGTGTCCCAG
Seq A exon
GTGAGCCCTTCTGCCCCGGGGATGGGGTGGGGGTGGGGCCTCAGACTCCTGGAGGAGTTACTTAATAATGTATGAAGGAGACTCCTGGGAAAGTTACTTAATGTATGGGGAGGACTCCTAGGAAAGTTTGTTAATATGGGAGGAGGGAAGACTCCTGGGAAAGTTATTGCTGTGTGGGGAGGACCCATGGGGAAGTTCCTTACTGTGTGGGGAGGACCCGTGGGGAAGTTCCTTACTGTGTGGGGAGGACCCGTGGGGAAGTTCCTTACTGAGTGGGGAGGACCCGTGGGGAAGTTCCTTACTGTGTGGGAGGACCCATGGGGAAGTTCCTTACTGTGTGGGGAGGACCCGTGGGGAAGTTCCTTACTGTGTGGGAGGTCCCATGGGGAAGTTCCTTACTGTGTGGGGAGGACCCGTGGGGAAGTTCCTTACTATGTGGGAGGACCCGTGGGGAAGTTCCTTACTGTGTGGGAGGACCCATTGGGAAGTTCCTTACTGTGTGGGAGGACCCATTGGGAAGTTCCTTACTGTGTGGGGAGGACCTGTGGGGAAGTTCCTTACTGTGTGGGAGGACCCATGGGGAAGTTCCTTACTGTGTGGGGAGGACCTGTGGGGAAGTTCCTTACTGTGTGGGAGGACCCATGGGGAAGTTCCTTACTGTGTGGGAGGACCCATGGGGAAGTTCCTTACTATGTGGGAGGACCCATGGGGAAGTTCCTTACTGTGTGGGAGGACCCATGGGGAAATTCCTTACTGTGTGGGAGGACCCCATTGGGAAGTTCCTTACTATGTGGGAGGACCCATTGGGAAGTTCCTTACTGTGTGGGGAGGACCTGTGGGGAAGTTCCTTACTGTGTGGGAGGACCCATGGGGAAGTTCCTTACTGTGTGGGGAGGACCCGTGGGGAAGTTCCTTACTGTGTGGCCCTGGTCAGGTGCCTCAGCCTGGCTCTGCTCCAATCCCGGCTCTGCGCTGTGAATTAGAATTTTGGTGGGGACTCTGCTCCCTCTCCTAGAAGAGGAGTGCGAGAGTGTCATGGCACCTCAAGGTGCTGGTGTGAGCTCTAGGAGACTGGCAGCTCAGGCTCCTGGGACCCGTGTGGTTGCAGCAGGACAGATATGTAGTATGAGCTCTGCTGGGTGAGTGAGAAACCTGACCCTGTTTGGCAACAATCACCTTTGCCTTTCTTGGAATTGGAGGCAAAGGAGAGAGTGACTAGAGGCCATAGTGCTAAGAGAACATTCCTGAAGTTTCAGAGTGAGTGGCGGGAAGGCAGGGCCAGCACTGGAGCCAGGAGTGCAAGCCCCACAGGCTGCAGCATGGGGTCACTCAGCCACAGCTCCTCTGACATTAGTCACTGCAGCCCTGTCACATGCCATGTTCCTCCTTGCTTCACAGTTGGAAAGGGTGAGTGTCCTGCCCTTAGGCACTGCCCTCAGCCCAGGCTGTTCTAGTTATGTCTCCGTGACAGAGCCCAGGGTCCTATTCCTCAGGGAGCAGTCGGACGTCCTCACAAGGCCAGAGCTGAGGGCAGGGTCTGCACCTCTGGTCAGAGTGTAAGCCTGGGAGCTTGGGCACTATGGACAGTGTGAACAACAGGCAGATCACCCCACCCTTCTGCCCCTGGCACCATGTTGCTGGTGCCAGGTCCTCCAGGGAACAGAGTAAGCAAGGTTCAAAGGCCCTGCTACATCCAGGGCCACTCCTATTGGGTGACCTGGGCCCTGTGCTAGAAGCTTCACTCCACTTTGTCACATCCCCTAGTCGGTGACAGGATCTACTAAAGTGGCCTGCCATATTAGTTAAGAGAGGTTTTGAATTTGGGGTACAGAGGAGTAGGCCATGAGGTGCACCTCAGCAGAAGTCAAGAGAAAGGAAACACCATTAGGGCACCTCAGGCTGAGGAAACCCCAAGGGCAGCTGAGCCAAGGGTGAGGTAGGGTCTCTCTGTGGAGATGAGTTTCCTGCCGGCCACTGAACCCTCTCAGCAGTGCTCAAATCCACACTGAAACTCTGATCTTTGTCTAGAGCCATGAAGAGTTGAGTAGCCTGTGTCCAAGCTATAGAGGAAGGTCACTTGAACCCAGGAATCCAGTCCATCTGGGTAACACAGTTAGATCCTTATGTCAAAAAGAAAATACAGGACTGGGCCTGGTAGAGCATCCCTTCAGTCCCAGCCATCAGGAGATGACAGGCATCTCTGTGAGTTCAAGGCTAACCTGGTTTACACAGAGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACTCTGGGGGGGGGGGAGAGGAGGGGGAGGAGGAGGAGGAAAGTAGTAGTAGTGGTCATTGTCATAGACATCGTCATAGACGTAGTCATGGTACTATAGTGGAGTTAGAGAGCTGGCTCAGAAGTTAAGAGTACCGACTGCGCTGGGCATGGTGGCGAACGCCTTTAATCCCAGCACTCAGGAGGTAGAGGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGAGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGGCAGAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCCAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAGAGTACCAACTGCTTTTCTAGACTACCTGGGTTCAATTCCCAGCACCCACATGGCAGCACACAGCCATCTTTAACTTTAGTTCCAGGATGTCCCATGCCCTCTTCCCACCTCTAGCAGCCCCAGACATGCACAGGCACACATGCACATGCATGCATGCAGGCAAAGCACGCAAGCACATCTAACAAAATGAAAGCACCTTAGAGAGCACTAAGCACCTGGTGGAGGTGTGGCCCTCCCTGCAGGACAGGACAGAGCCCTGCAGTTACCTGGGGCCTTTTCCCTGTTTTGTTCAATTGGGTGAAGTTGTTTAGCTGGATCTCACTTCAGCCTAGGCTGGCCTTGAATTTACAGCAGTCCTCCTGCTTCAGCCTCTCAGAGTCTATGCTAACAAGTATGAGCTATTAAGCTGGTACCATTTTGTTTGTTTGTTTGTTTGTACTAGAGTTGGTATTATTATTTTTTATATTTGTGTATTTATTTGTGGGGGGTGTACGCGTGTGTGCAGTCTCCTCTTGCACCAATCCGTGCATCGATCACTGTGCGTGTGTGGTGCCTGTCACTGAAGAAATGGAGAGATCTGAGGACAGCTTTAGCAGTTATTCCCCTCTCCTGCCACTGTGTGGCTCCTCGGAATTGAACTCAGGTCATCAAACTTGGCACCTTTAAGCCATCTGGATCAGCCCCTGAGAGGAAAGGTCTCTAATCGAGTCTTCATACGGTTTGTCCCCAGCATGGCCCACACCAGAACAATGTCATTGTCGGTCCATCTATCCACAG
Seq C2 exon
GTCTCTAACTGGTTTGGCAACAAAAGAATCCGGTACAAAAAGAATACAGGGAAGTTTCAGGAAGAAGCCACCATGTACACAGGGAAAGCATCCACAGTCACCAAGGCCCGGCGTCCCAGGGGTCAGAGCAGCTGCCAGTCCACACCCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031860:ENSMUST00000134777:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.383 A=NA C2=0.593
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(75.0=97.8)
A:
NA
C2:
PF0004624=Homeobox=PD(21.7=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types