MmuINT0116758 @ mm9
Intron Retention
Gene
ENSMUSG00000023868 | Pde10a
Description
phosphodiesterase 10A [Source:MGI Symbol;Acc:MGI:1345143]
Coordinates
chr17:9113369-9122077:+
Coord C1 exon
chr17:9113369-9113397
Coord A exon
chr17:9113398-9121956
Coord C2 exon
chr17:9121957-9122077
Length
8559 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TGTGTCGTCTGTGTTTAAAGTAC
3' ss Score
4.97
Exon sequences
Seq C1 exon
ATGAACCATCTCCCAAGGAAGTCAGCAGG
Seq A exon
GTGAGTAACTGAACATATTTCCTACAACACCGCCCCAGGACTGGAGACACGAAAGTCCCTCCCTCTAAAGTTCCCTATTGTCTTAGCGTCCTGGTGAGAAAAGTACAGCAGGATCTCTGTTCCCTTTTCAGGATGTCCCTAGGGCAGTCAGCACAGAGAAAGGTTGCACACAGAGGCCCCAGGGCTAAGTACCCAGACCAGGCTCCCCTGTGCCCACACACCCCAGGTCTGTATCCATGCTGGGCTGTTAGAACCAGGACTGCAAATAGAGGTGGGATTTACAGATTCTCCAGAGGAAACCCCCAAAGGCCACACTGCCGAGCATCCTCGTGTGGAGTTGTCACCTAAACCCTAGCTGTGAAGACCACTCTCAGCACAAACTGCTTGCTCTGTAGGACACCTCAGCCCACCCCTGAGCTGGCTCCCATCTGTACTTTGCCTCTGAAAATCCATGGTTCTCAGTCCAGCCACCTCCATTGTAGAGATGCCAAAGCTGATAGTTTCAATGAAGGCAGGAGAGTGCTCAGCACCCGAGACACTCAATGCTGTTCCCATTTAGAGTAAGACCGTTAAGGGTTTTAGCCAACATAGTGAAGTAGGGGGATGGACTGGGGGATAGAGCTCAGACAGTGAAGTACCTCCAGTACTCAGATGAGGGAGGACCTGTGTTTGGATTCCCAGACCCTGTCTTAAAAGAAAAGGCAAGGGTGGCCATATGCACCTGTAGTCCTGGTGACACTGGATATTTGAGGGACACAGGATAGCCATATGTTTGTTACCAGCCATGTTCCTGCCTTTCCTGTTGAGACTTAGAAAGATGTCCTGAGCAGAACAGGGAGAGGCAGCATCAAGATGAGAAGAGATCTCAGCTCTCGGCTTCTGGACCATGCCAGTCTGTGGGCATGTCCGGGGCTTCATGGGGACAGAACACTACAGCCATGTGCTGTTCTCTCTCTCAGAAAGGGGATGTGTCAGGAATGGAGTCCATTTCTAAGTTTTTATTTATAATGTTGATTTTTTTTCTAAGTGTCTATGAAAGGTTGTTGCTTGCTCTTGGAAAGCATGATGTCCGTTGGGAATCTCAGCAAATGCTTTGCTTTTTACTAAGCCAGCCTGGCGTGCGAGCTTGGCACTGAGCTGGGAGACCTTCCATTTGTGTCTTTCTCGCTGGTGTTCCTTGGCCCATCAGCTCTTGCCATTCGTTGTCCTTGTGATCCAACTCTCTAGACCCCTCCCCTGTAACACCCCCCCCCCCAGGGCCACTGTGTACCCTGAGAACTGTGAGTTCTGCAGCGAGCTACCCTCTGTCCTGGTTGTTTCTGCTTTTGCTCACATCAGACCAGCATGATTAAAGACGGTGTTAGCCTGTCCACCCGTATGGTTAGCCCACCAATAATCATTCACTGGTCTTTGCATTGTCCTGAGGAAGCAAAACAGAGGTTTCCCTAAAATCCATTTTTCTGCAGGTCCTTCCTTATACAAAAGTTAGCTTTTGTCCCAGCTGTGAGGTGCTACTTACACACAGTGGTTGTGTGGGAGGACATTCACAAAACCTTTTAAATGTAGCACAGCGCCAGTCTGTGCTACTCTGTGCTGTGTGCCCACCGCCCTCACTGTTCCATCAAGCTCTGTGATCTGCGGAATGAGGCTACAGCGCTGTCCCTTTCCAGAGGGGGTTAGGGATCTGGTGCCCTCTTCCTGTGTGTCTGAAGAGAATGATACTGTCTGTACTCATATACATAAAAATAAATAATTCTTTTTTAAAAAAAAGTTTTGCTGACTTCATAGTACTTAAATGGTTAGGTTGCCAGATGAAGACACAATGGTTAGGTGCTCTGCTACAGCCCTGAGCTGAGAGCAACTTGAATTTTACACAGAAGCAAGTGTCCCAAGAGGCTGAACTTCTTAACTTTCAGGAATAGTTTTTGACTTCACAGAAAGGATTTTCCCCTTGGTATTCAAGTCCTTCACATCTCTTTGCTTACTTGCTAGTATTTCTTCTTTGATTCTCTCCTTTGAATCTCTTTCTTGGTGGGGAGTATAGACCCGGAGCTGGGTGGTGGAGCAGCAGGGGCAGGAAGCACACCCTGCTCCTTGCTGAAGTTGCTCTTGCAAGTACCCCATCTCCCAGAAAGTCAGAGTGCTCCCTGGAGAAGGCCCTCCCTCAAGGATCACGTGATCAGCTGCCCCAGGGGTGTCCACAGGAAAGGGCACCTTCTGATCCCCTGCAACTGGAGTTAGAAGATGGTTGTGAGCCACCATGTGGTGTGGGAAATTGAGCTCAGGTCCTCTAGAAGAGCAGCAAGTGCTCTTAACTGCTGGGCTGTCTCTCAAGCCCCTTTGGAGAGATTTTCTAATGGGCTGGCAGAAAACCTGGTTATAACTAAACAAGGCAGAGGAAGCAGGAAGGTGGGACTCAAGATGCAGGGCTTCTCTGTGAATGAGTAGAAAATGGGGTTTTCTGTCTAGGTGGCTATAAACTGAAGTAGGCTACCCCCAGTGTCCCCCAGGAACAGCACCAGCCCCCTTTCAGGGTAAAGTTCTATTAGTATTGAATTCCGTAAAAATGCAAATGTAAGATAATATGGCTGATTTTACGACAGGGCTCAGTCAATTCCAAAGCATAAACATGGCTCTGTTGTTAAGAGTGACAGTGAGCACAGAGGCAGCTGGCCTCCGAAGGAAGGGGAGGACCTGGAGTAACTGCCTCCTCCAGCTGACAGCCACAGCTGGCAGATATGACCAAGCATGTGTGTGTAATCCCAGCACACGAGAGAGACAGAAGAAGGAGGCCAGCCTCTTCCACATAGTAAGTTTGAGGCCAGGCTGTACCACCTTAGAGGTGATTTCAAGGTAACCAGAAGGAAACAACAGCAGCAACAACAAAAAACCCCAAACAATGGAAAATAAAGTGAGGACATGTGTAGCATGGGAAAGCTGATTCTTTTAAGCCTAAGTACTCAAGTAGTGGTCACTTATAAAATCTGCAGCCTGGAGGGTTTATGAGTGTAAGTACATACACACCAGGCATACTCTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGACAGAGAGACAGAGAGACAGAGAGACAGAGAGACAAAGAGACAGAGACAGAGAGAGAGACAGAGACAGAGACAGAGAGAGACAGAGAGAGAGGTACTAGCTATGTGGTGGCTTTATATGATTCAAGATAATACTTACTGACAAGCCTATGGAAGGCCAGCAGAACCTGTCACTTTGATAATGAACAGATCCAGAAGACTCGGAAAGTGTATCAGTAACGGTCCCTACTGTTGTGACAAAGTACCCAGGAGAGACAACTTGAGAGAGGAGGGGCTTGTTTGGGCTCACAATTTGGAGGAGGATGACAGCCCGTCTTGGTGGGAAAGCCGTTGCAGCCGAGTGGAGCAGCTGTCGCCCTGCAGATGAGATCGGGGAGCAGAGATGGATGTGGGTACTCAGTTCACTTTCATCTTTCAGTGCAGCCCAGCCCCGCCCCACCCCCCTCCCCCCCCAGCACATGAAGTGTTACTGTCTACATGTAGGGTAGGCTGCCCCACCTCAACCAATCTAATCTAGAAACGCCCTCTCAGACATGGCACTCAGAAAGCTTGCTTTCTGGATCCTGCCAAGTTTACGGCATTAACCAAAGCAGTATCCAAAGAACACATCAGAGATGCCAGGTCCCGGACAGGTAAAAGAAAATGGGAACATTCTCAACTCTAAACATCCAATGGCCCAGTGAGTATTTCTCTTCTGGAAAGTCACTGCACCCTAAAGAGGAGGAGCTCTTGGGATGCTTACGAGGGAAGCCAGGCTTCTCACGATCAAACATGTGGTTTGAAGGCTTGAAGTTGCTTCAGGCACTGGAACTTGTGAGTGTATAGAAGAACGCTTTCCCTCCCAGGCTGTGGGTGGTGTGTTTCAGCCTTTAACTGCTGGCTATTCAGGTAAGCCACAGGAGCTGTGGAAGCCTCTAAGGAGCTCTGAGCACACCGGCATCCCAAGTGCATTCAATATAAAACGATTACCGGGGCAAGTCAGTGAGTCCTCCTGCTACCTGGGCACAGCTCTCAGTGTTACTGGATCTGCTTGCTCAGATTTCAAGCAAAGCCCACCGCATCAGCAGTGGATTGAACACACAGACCATTCGTCTATGAAGAGTTGTTTCTGACTGCATGCTGATGGTGCTATGTAAAAGACAGGCACATCCAATGGTAGCCACTGGGAGCCGTTTACTCTGAAGCTCAGTAACGAAGCCACACAATAGCCAGTTCTAAAGACAGGAGCTCAGCATTCCTCTTCCACAAGATTTCAAGCTGTTAACCTGTTTTACCCGACCATTCTCAGCAGCCATAAAGCCACACCAGGGTGTAGATATTTAAAGACATCACGACAGAAGTATTGTTTGAAGCCCAGGTGCACAGCTGCTTCTGGTCCTCTGAAGCCCAGGCAGTGTGAACATTGCTATTCAATGTTCTTCTTTCTTGTGAAGAGAGAAATATAGAAAATACCTACAAACAGTGTGCCTTGATGAATCCATTTGGCCTCCCATCGCAGATTCTCATTAAGGTGTTTGATTTATTTGTCAAAGACATGGCTGCTTGCTCATGCTTTCTTGTTACTTCCCCCAGCAAGAGCACACTGCTGGGAACTTTAATCACTAGAGACGGACACCCTGAAGCCTATATGCTGGTTTCTAGCAGCGATGGAAGTGTTGGAATTGTTTGCTGTTGTCATTGATGACTCTTAACGATTGTATGATTCTCCTTTGCCTGAATTATTATCTGAGTAGCTCTTTGCATCCTGGTGGTCTTTTTTGCTCCAAGTTAAATTAGTTCATATTCATTTTACCAAGCCCTTGAATACAGTATTCTTCATTTTGTTGTTTCCGTTTAGCTTGCATAGAATTGATGGTACTACCTTTTCAGACGCATACCCCATTTGTTTGTAAAATCCTGCCTGATTCCCTCAGCTCAGTGTGAATCCTTTGGGGAGGCTGGCCTCTCCCCTGAGCTGGTGGCCCATGTCTGCTCTCCTTCTATGATGTCTTGCATCTTCTCTAGCTTTCTCCAAACCCCCAATTCTGCTCTCAGGAACAGGCCTTGCTCCTGTTACAGGGGGCGCAGAAGTCCTCAGAGTCTCTTTCCAGGACTGAAAGTGCAGCTACCGTGTCCCTTCTCCCAGACCTCTAGGGTAAGCCTCCTGTGACCCTGTCAGTAACTATTCTTGCCTGTTTTCTGAGGCATTGCCGAAGGTGGATTCCTGGGTCTTGCAGATGCTAGGAGAGTACTCACCACTGAGCAGCCAGCAGTTTCCTTGTCTGCCACTGAGAGTTTAAAATGAATGGTTGCTGGAAGCCAGCCCCTCACTCCATACTATGGTGTGCCTCCCTCTGCCTCTATCTCCGCCTCTGCCTCTGAGGCTTGTGCACTTCATTGGTCATTCCTTGCCAGTGCTCAGCTGGAGAGCAGTTAGGATACTCCAGCTTGTGGTGTCTGCATGACCAAAAAAACCCTTTATTTATAGCTTTGCTTACTTTAAAATGCCTCGACTGAGCTGGAGAGACAGCTCAGCTCGTAAAGTGCTTACTCTGCAGGCTGAGGATGCCAGCCGACTCAGTCTCCAGGATCCACAGTGCAGACAAATGCCAGACGCCCTGGGGCACCACAGTGAGGAGGCACCACAGTGACCACTTGGTGACAGTCGAGGACACAACACAATAAGATTTTGTAGGAGATACCATGACATCCGTCGGGTAGGACTGGACATACTCTGCTTTCTGTTTTCTGGCACCGCACCTGTTGCGAGGTGCTGTCTTCAGTGGAGTTACCCTTGATAAAGGTTGCTCTGCGGCAAGATCAGTGTGAACTGGCACGGGATCCCAGGGTTCGGGAAGCTGGGCAGTGCTGGAACTGACTTCCTTAGCTCTTGATCACAAGCTATCTTAAAGGACAGCTGCCACTTGGCACTCACGTGAACTTTATGAAGTGTTAAAAGTTTTGAAGATGGATAGAGTGCACCCCCTGTCACGTAGATGAGAGACTTAGAGGCCAGAGATGACATTCCATGATGAGCAGTCCATCCATGTCCCAGGATCTCTCTCTGTCTCTCTGTCTCTCTGTCTGTCTCTCTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAAGCTGCTAGGTGCTGACCTCAGTGGGAACAGACTGTTATTAAAGGGTTATTGCCAGACTATGAGAAAGGACTGAATATGGAGACATTTGTAACAGATCTCAGCTATTCATGTGTCTACTTGCTGAATCTTGCTGAAAGCCAGAGATTCAGCTCAATGGTAGAACACTTGTCTGGCAATCGTGAGATCAGGGTTAAGTTCCCAGAATTCACACCCCCACACAAAAACCCCCACCAAATTAACCCCACACATCCTGTGCGGCTTTTGGCATGGTCATTCTCTCTCTCTCTGCTCGGCTGTCCTCCTGGTCAGCGTGTGTCTCAGATAAGCATATTCCCAGGAGTTGGGGAGACTTCAGAGTCAGTAGAGAATCGGTGGGCAGTAGAAAAGAGTGGTTGTGGCTGTCTAATATTCTATGGAGCTCTTCAGAACAATTCACAAAGGAGCCTTCTCAGGCTGTAACCCACACAGTGCTGTTCTGCCGGCTCTGGGATTTGAACTGCCTGTGAGTCTATTCTGTCACCACACTGGCGCCTTTGTAAGATGGGAGTCGGAAAGAGTCTCAAGCTAGGAAAGAGCTGGGGAGTAATAGCAGTCTGTTCCTGAGACCGACCCCAGCAGTAAATCACCACAGATGCAGTCCGGTGGCCCGTGGTCAGGGTAGAGGTCACACCCAGGTCCTCCAGTTTTGGAAACGTAACCACAAACACTTATTGAGGTAGGAAGCTGCAGGCTTGTGGGGAAGGAGGGAAAATGTCTGCTTTATACATTTGTTCGTTGTACGTCAAGGTCCTCGCTCCCCCGGGCCTGGCCTCTCCCATTCTTGATTTAAAACTCTCAAGCCTGTGAGCTGGCTTCCCCCAAGGTTTCATTGACAAGTCTGCTGTGATGATCACATCAAGGTTTCTGCCCGCTCTCCCAGAACTTTACAGTTAGAGATCTGAGAGCATGCCACAGGGCTGTCCCGTTGATAGGGCAGGGGCACCAGATCAGACCATTCTGGTTGCAGCTTTGGTTTTGTCCATTGTAGGGATTCTACTCTCCTCATTTCCAGACAGTGAAGGCAGGCACGTATCCCCCTGCCATCCTGAGGTTTAAGTTGTGAGTGACGTCAGAGAATGATGTCACATGGCAGTGGTATTCATGCTTGTTCTGGGCTCCAAGCACTTCAAGCACGGGCTCTTCCCGTGACCAGATCATCAGGGACAGCTATAAGCCCTGGCTTGGGGTGGCAACCCGGCCTCTATAGTCACTGACTGTGGCTCACTAGTCCCTCTGTCTCTGACCTATAGTCAGGGAAGTGCTGGTATTTCCTAAGCACCATGTGACCCCAGTGGCCCATGTAGGGGCTCACTGGGACTCCTCTGCTCTGCACTTGTAACAGACACTCACATCCTTCCATTAGAGTGTGAGCATCAGAGGGACTGTTCCCTAGTGTGGGATGAGTGGCCGATGGAGCCCCCCAGCTCCCTCCACAGACAGGTTTTACGCATGACAGTTGTACCAAAAGGAACAGATCTTTAGAATGAGAGATGTCTGGGTGGCCCAGAAACAAAGAGGCCTCAAAGCCAAGCCTCCGAGTGCACAGGGATGGGGACATAGCAGACAGTGATCCCAGTGAACAGTAGCAGTGTTCTCTGGAGGGGGCAGGTCTGTTTTCTCAGTGCAATGCGAAGCCTGGGAAAGGTTTTCAGCTGAGGAGTAAGCGAATTTTGTTTTATTTTTAGCATACAGTGTTTGCTGCTTGGAAAATGGGGTTTGTAAGGCGAGCATGGGGCAAGGAGATCAGTGAGAGGCTTTGACATCTATTCTTTAGGGAGGAGACAGTGTGTCCTGACTGGGGCAGGGTTACATGAGCACTCTGGGCACCCTCTGGCTAGTATGACAGGGACTCCTGTGTATGTGCTTCTAGGGACTGCAGCTTCAGAGCACATTGCTCACCTGCTCTGCAGAGACCTGAGCTCATGTGTCATACATGGTTCACCCGGCATCCTCTCTGAGGGTTTTCTCATAGAGCTATCACCTTTTCCCCAGGCGACCTTTGAACTCTTTCCTCAGGTGACCTTTGAACTCTTTTACCAGGCAAGCTGCCATCATGCATGAAAGTTGTAATCTGTAACATTTGCTGTTTCTATATCAATAAGTTGATGCAGGTGCAGTTTAAGGATAACCTTAGCTGAGGGGACCCAGATAGTTCAGTTTCAAGTCTCCCTGTTTTACAAGTGGATTCTAATGCTTTAACCTGCTCTGGCAGCGGCCCACAGCCTGAGACGGAAGTCGTAGAAACAGCATTGTCTGCGGACGAAGGGGTTTTATTTGTACATTAACCATGCCTGACTTGTGTCGTCTGTGTTTAAAG
Seq C2 exon
TACCAGGATACGAATATGCAGGGAGTCGTGTACGAGCTGAACAGCTACATAGAGCAGCGCCTGGACACGGGCGGGGACAACCACCTGCTCCTCTATGAGCTCAGCAGCATCATCAGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023868-Pde10a:NM_011866:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.932 A=NA C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0159021=GAF=PU(10.4=41.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: