MmuINT0118744 @ mm9
Intron Retention
Gene
ENSMUSG00000025764 | Phf17
Description
PHD finger protein 17 [Source:MGI Symbol;Acc:MGI:1925835]
Coordinates
chr3:41413725-41420786:+
Coord C1 exon
chr3:41413725-41413842
Coord A exon
chr3:41413843-41417044
Coord C2 exon
chr3:41417045-41420786
Length
3202 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
CTCTGGTTTTCTGTTCCTAGGTG
3' ss Score
10.82
Exon sequences
Seq C1 exon
GTTCGGAACCTCACTTACATGGTGACCCGCAGGGAAAAGATTAAACGGTCTGTGTGCAAAGTCCAGGAACAAATTTTCACTCAGTACACTAAGCTCTTGGAGCAAGAAAAAGTTTCAG
Seq A exon
GTATGCATAAAGCCCTAGATGTAGGGCAGGGGTTTGAAGCCTTGACACTGCTGTTGAGGGAAAACAGTTGTTCTTCCAATTTGTCCTGTAGAAAGTTTTCAGTAGCACAGCTGTTCATATTCAGGGAACACCTTTAAACATTAAAGACATTATATTGGAGGGAAGGAACAGAATTTGGCATTAAATAGGCTTTGAGACCTGTAGCATCTCCCTGATGACCAAGTAGAAGCAAGTCATAGACCTTAATTTCTCTCTCCAATTTCATGTAAAGTGGGGATGCTATCTCAAGTTACCTAAGTATCAGGATATGGGAAGGAAAACAAACTGTAGCACATTGCAGAGCTGTTGATAAACATGGGGATAGCTACAAAGGTGTGACTTCATGGTCTAGCTTTTGGAGCAATCTACCATTGTAAATACTTGCTAAGACTACTTACCACATACACGCATTTCCTAACACTCATGGTGGACTTCTGAAGGGATGGATGAGATGGAAGTCTGCGTGGGCTGGGCATTTAATTAATTAATTATCTTCTATTTACATTGTTCTAGCCAGCCAAAAAGGAAGAGAAATATGGGAATATGCTTCCTCTACTCTGGAGAGTGTGTCAGTTATTAATGTTGGCCAAGTGTTTCACTCTGGGATTCATATGATCTTCAGTTAGTCTGGTATAGAATCATGACCTCTAAAATGTGCGATTAGCACCAGTGTTCTTGATGATAAGCCCCAGAAAGTAGGTAGTGTAAGATTTCATGGAGGAAGTTGGTCCTGGGATACCTCAGGGAGCAGGTGGGTCTTAGGCTGGCCTTCAGTGGAGAAGGATGAGCGACTCCACCTTGGTTTGCCCTTTGAAGTTCCAGCAGCAGCACTCTTGGCACTTGCTTGTGTGGAGAGTCATTGTTCATTCAGTCTTTGGATTTTTTCCCTAGATAATTATGGCATCCAAGCAACATAGTAGAGATAACCTGGTTAGCGGAGCACACAAAAAAGACTGAGGGGAAGTTTTCAGCCATACTCTCCTCTTCAAGTGCCTCATACTTTTAAATGTGTTCTTGCTAAGATTAAGTATTTTTCAGAGGAACCAAGTGTCTTTCAGTATCTGGAACTTAAAACTTCAGTTGTAAACTTTGAAAGTAAGTTTTCCAAGTAGTGTCATTGGTTAAAGACAATGTAGTTTAGATTCTTTAAGTTCACTCTGTATCTCTTTGGTGTCTGGGATGGTTGATGGTAGTATACAGAGGCCTCCTAGTTGAAGCTTTTGGTACTTGCTAAGGAGTCAGTGATAAAGGATGATGTGTGTGTGGCTGGAATGGAGTCCTTATTTTATGGGTATCCCCGGCAGCTGCTTGCATCATGGTTGAGATTTGTACTTGGCTCTTCTCAAGGGGTCAGAACATATTTTGGGTTAGAACTGAAATGTAGTTCATCCAGAAGTCCTGCTGCTGCTGAACATGGCGGCTTATACTTGTTAGCATTCTGGGGGCTGAGGTAGGAGGAGTGCCAACATTTTAGTCAGCTGGACTAGGTTGTGAGTTCTAGGTCACGCTAGGCTACAGAATGAGACCTTGTTATTAGAAAACAAAAGCAGAAATTCAGAAAAGAGAAACAAATCTTTTCTTCATTTTGAGCTGAACAGCAATTACAACCATTTGAAAAGACTTTATTGTTGTGGGATGCTATGCAAATGCAGCTGAAGCCCCCAAGAGTGGCTTTTCTTTCTCATTTCTAAGCTGGGATGCTTAGTTTCCTGCCCTTAAAGACACTTTCAAGGGAGATGCCCATGACTTTACATGTGTCTTTTAGAGTTCATGGCTCAAACTTTTGCGATTCTGGGAACTAGTTAGGGTCATTTTGTGGAATGAGAGCTTCTTTAGTGGAAGTGGTACTTAAGGGAGGCCTGCCTGAGCTTCAAGTCAGGTAGATAGAAATTATAGTTCAGACAACACTGGGCCTTCTCCATCTTTGTTTGCTTTAGGGGCATTTCAATAAAAAACAAACAAAAAATACACTTCAAATGCCATCAAGATCGACTCCAGTGATTGTTTTCGGAGAAAGCAGGCATTTTCAGATGAGCAGCTTGTAAAAAGGACCTCAGCTGTGTTGCTGTTAAGGTCTTGTGGGTTGTAAGGTCTTATGAGGGTTCCTGTAGTACACAATGGAACTGAACCTTGTGGTTCACATCTTAAGAGGAGACAAAACATCGAGACTTGCTGTTTTGTAGTTGGTCTTGAGACTCTTATAGAACCATGGTCCTTATGAATTCCCCAGCAGTTTTCAGACCAGCGTTATAAGGTTTATTAATGAGTATGAAACACATTTTCGTGGATCATAACTAACAGACAAAACACTAGGGTGTGTCAGGCTGGAGAGTGGTTAAGAGTATTTTGCTGCTTGAATATTTCAGAGGATCTGGGTTTGATTCCCAACACCCACATAGCAGCTCACAGTCTATTAGAATAAACTCTAGGTCCAGAGGATCTGATGCCCTCTGCTGGCGTCCACGGGCACTGTACCCTATATAGTACAGACATACATGCAGACAAAACACTCATACACATAAAATAAAAAATGATTAAAAAAAACAGGAAGTGCCAGTTTCTAATGAGATGAGAATTGATATTCATAAATTCATAAAATGTAAGCTTTTACTAGGTTAAGCTATGAAATGTGAGTTTTGTGATTTGCATAAAAGACTGATTTAATGATTTAACAACTTGAATGACAGGTTGACCTCCACGCATTTTCCATACAGCGAATGAACTTTGCTTCTTGTATTACATGTCCAGAATTACCGTGAGCACTTACCTGTGTTCAGTTTGCACATTTACATGTACTTGTCCTCCGTGGTCCTCTGAGAAAGAAACTTAGAAGCTCTGCTTAGTCTCAGAGAGGAAAGTGACTGGTAGATGGGACAATTGCTGCTATGTAGAGGTAGTGGCCGCCATTGGACAGATTTCAAATGGATTCCCCAAAGTTTCATAAAAAACTGTATTTTAGTGGCTTTGGATTAAAAAGAAAGATCTAGTATACTGACTACAAAGATTGAAAGCAGATTCTTGAAGCAGGTCATATCTTTTTTTTTAAAACAAAGTGCTGCTGCTGCTTGCTTGGGTGGGAAGTTTGTATAATGATGTTTCCAGTCTAGAATGTTATGAGTTTGGGTTTGCTTATGTAATTTTTCCTCTGGTTTTCTGTTCCTAG
Seq C2 exon
GTGTGCCTTCTTCCTGCTCCTCCGCACTGGAGAACATGCTTTTTTTCAACAGTCCTTCTGTGGGCCCCAATGCTCCCAAGATAGAGGACTTGAAATGGCATTCTGCATTCTTCAGGAAACAAATGGGCACTTCCTTGGTTCATCCACTGAAAAAGTCCCATAAACGAGATGCAGTGCAGAATAGTTCTGGGACCGAGGGCAAGACCTCGCATAAGCAGCCAGGTCTTTGTGGTAGAAGGGAGGGGCTGGAGGTCTCAGAAAGCTTGCTGAGCTTAGAAAAGACTTTTGCAGAAGCACGTCTCCTATCATCAGCACAACAGAAAAATGGTGTGGTGACCCCAGACCATGGGAAAAGAAGAGACAATCGTTTTCATTGTGATCTCGTTAAAGGAGACTTAAAGGACAAATCTTTTAAGCAGAGTCACAAGCCTCTCAGGTCCACAGACACATCCCAGAGGCATCTGGACAACACAAGAGCTGCCACCTCCCCTGGAGTAGGGCAGTCAGCACCTGGCACCAGGAAGGAGATTGTGCCCAAGTGCAATGGCTCCCTAGTCAAAGTGCCTATAACACCTGCCAGCCCAGTGAAAAGCTGGGGAGGATTCCGGATTCCAAAGAAGGGGGAGCGGCAGCAGCAAGGAGAAGCCCATGATGGGGCCTGCCACCAGCACTCAGACTGCTCCCATCTGGGTGTAAGCCGAGCTCCAGCCAAGGAGAGAGCGAAGAGCAGGTTAAGAGCTGACAGTGAGAATGATGGGTACGCCCCTGATGGGGAAATGAGTGACTCAGAGAGCGAGGCATCAGAGAAGAAATGTATCCATGCCAGCAGCACCATCAGCAGGAGGACAGATATCATCAGGCGAAGCATCTTGGCCTCTTGATGAAACAGCCGGTGTGGAAGCACATGGCTTGTTGCCGTGTGCTGAGGAGAGCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCTGAGCTACAGACATACTTCCTTGCAATTCAGATTGAATTTTTTTCCAGAGTCATTTATAAATCATTGTGAGAAGTTTGTGTTATTTGCAACTTGTTGAGGAAACAGAAGAGTAGACTGTAACCATAAGACACTAAGATTAGAACCTGAACTAAACACTATAAAAAAAAAACCAACAAATGAAGTAACTTTGCAGAGGGCCAGGCTTGAATAGCACCATGTATTATTGCCCTCTACATTCTCCCCAAAGCACAAACTCTTGAATACTCACTCTTACAGAATCATAGAATTCTGTGTGGTGAACAAGTCCTATTTCTAGAAGCCCTCATGTACCATTTATAGCCCACAAAGCTTATTTTCTAGGAATGGTAAATGCTGACGGCATTTGGCTCCCAGGCTGTGTGGTATGAGGAGCTGAGGTTCTGAAGCTTCACAACACTGGGATCTTGCACATGTGGCATCCAGGGGAAGAGTTTACACAACAGGCATTGCTGGAAGGCTGCAGGGACAGAGCAGAGCTGCTGCACTGAGATTTGGGGCCCGTGTAGCAAGGTCCCGAAGCCCTGAGTGGGCTGTGGACACAGGACGGGTGGAGGAAAAGTTGTCCAGAAACTTCTGTGAGACAGGGCAGCTGAGGCCCAGGTGTTACTAGTCCGCTTGACCTTCCTCTTTCCTAACTGCTGGCCTTTGGATCCAAATGGGATTTCCCTGGCTACTGCCAGTACTTGGCCATCTGGCTTCCAATAATACAATGGTTATTCAAGTTCAAGTGATGAACTTCTGGTGACTCTCACTCTACAGAGTCAACCACTAGTGCATATTTGGGAAATCCAGGCTTCCACCATGAGTGGATTCCTTAAGCAAAAAGGAAAACAAAAAGCAAAATAGGTTATATTTTAAAATATAGAAAGGCAATAAGTTGCATCAAGGTTATACAGGAAAGAATTCAAAGTGTATCCTTGAATAGGTTTCTGGAGTTGGAGTTCTAAACTCTGATTTGTAACTTGGACTTTCGAATTGCAAATGGCAATAACTAGTAAGTTATCAGCAATAATAAATTTAGCATTAAATTTGAGTATAATGTTCTGTTTTTGCACTCCTCATATAGTGCATATGTATTCAGACAAGTGGATAGTGTTAAAGTCCTGTTATTTTCTTTGGAATTCAATGTAGTTGTGAATCAAAATTAAGAGAAGGGAAGTTTCATTAGCAATGAGATTTAGAATTAAGGGCATTTGGAATAAGCCCAGTTTCCCCTAAATTACCCTTAGTTTATTAATATCAATGTTCAGATTCCTGACTCATTTATACATCTGTTTCCATGTGGCAGGGACATTCTGATATTTAATGAGCAATGCTTTGAGTTTGTAGAAGCTTTCAAGTCTTCCAGATGATTGTCAACAACAGAAAAGGCTTATTGAATTCCATCTTGCTATGCAAGTTTTATCAGATGATCAAATGACAGATCTGATGCATCTCATCGTATGTATGACATTTTCAAACTAAGTCTTAACTTCTCAAGTACATTGTAGTAGCTAATTCAGGGGAGGGGAAAGGATGACCCAGGTTTTAGATTGACTATTTTTTGAGCTATGGAGCTCCTTTGAGACTGCTGTCCAGATCAGCTCGTTGCTACTGGTATTCGAAGATTCTCAGGAGTCCAAGTTGTACTTTTGCTTGTAGCCTAATTTAAAAATGAGATGTTTTGCATCTGAGCAAAAACCTTTTGCTGGATACAGGAAAAGGCTGGACTCTGATCTAGTTATCTTTTGATTACAGCAACAGCTCTGGGTGAGAATAGAATTTATAGAGGAATAATCTGTGAAGCCATAGAAAGAAACCCTAAATTAATCTAGTGAGTATATGGCCTCTCACCATTTTAGGAGGCACCAGATTCATTTGCACTATTAGGAATGCTAGTTTTGTGCAAAAATAAATGCCTTACCTGTTTCCCCCCACATTTAGGTTGAAAAGCTTTCAAATGTTCCAAGTTATGCTGAACCAAAAACAAATAAAACAAAATGAAAAAAAAAAAAAAAAATAATAATAAAAAATTTCCCCCACAAAAACATAACAAAAAAAAAAAAAGCCCACACGTTTAATTACTGCTTTGAAATGCAATGGTATAGAGCACGGTTTCTGACAGTGTAATGATAGCTTTGTAAGTTAGTTCATGTCATGCTGGGAACTCTGTATGAGGCGGCCACAGGCAGCAGCAGCCCACCTACCTACCCACTTGCATTCTATTAGTATTGAGCTTTTTTGTTTGTTTGTTTGTTCTTTTGAATCTTCCTTGTGCATCCTGACCAAGAAATATCTTTGATTATGATCAATGTATTATGTCAAAATGTAGGCTAGTTGAACTTTTGTAAAGTTGCCTGGAATGTCATTTGTTAGGTTATAAACACAAAATTTAAATGAAGGGTTTTATGTGTTGTGTACAAATCTTAATTATTTTAAAATGGACAGACTTGTCATTACATTTGTAACCTTGTACAGAGGATTTTTCACTATGTGCCTAGCTTGGTGTCCATTCAACTAAAATTGAAAAAAAAAAGGTGCATGAAGAGTTAAAATCAGAAGTTAAACAAAGTCTATGTAGAGATGACTATTTTATATTACATGGCCCAATCCTGTATTTATTTCTACCCCCTTTTTGAAAGTATTTATAAAACTAGTTGAAGACAGCTGTATTTTTTTGTTGAACTATTTAGTAGAATTTGTGCCTTTTTGTCTGTATGTGAATAAATGCTGTACATTTTGCAATACATTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025764-Phf17:NM_001130186:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.686
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: