BtaINT0078754 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017493 | JADE1
Description
jade family PHD finger 1 [Source:HGNC Symbol;Acc:HGNC:30027]
Coordinates
chr17:29368416-29372780:-
Coord C1 exon
chr17:29372663-29372780
Coord A exon
chr17:29369327-29372662
Coord C2 exon
chr17:29368416-29369326
Length
3336 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TTGTGGTTTTATGTTCACAGGTG
3' ss Score
9.36
Exon sequences
Seq C1 exon
GTTCGGAACCTCACTTACATGGTGACCCGCAGGGAAAAGATTAAACGATCTGTGTGCAAAGTCCAGGAACAGATATTCAATCTTTACACTAAGCTTTTGGAGCAAGAAAGAGTTTCAG
Seq A exon
GTATGCATTAAGCCCTGGTAGGTCAAACAACAGGGCAGGGGTTTGTTAGCCTTAACACTCTGTTCAGGGGGAAAAACATGCTAGTGTCTTTTCAATTTTCTTTTTTACTCTAGAAGAATCAAAGGGAAGGCTTTTGCTGTTGAGGGAAATCTCAGGCATTTGAGGCACTGTGGTCTAGGGGACGGGGCCATGGCTTCAGCCTCATATGGGTTAAATCCTGTATTCCCTACTTATATGCCCAACACAAGTGAGTCTAAAGTTTTCTGAGTCTCTTCCATTTCCTCACACGTAATGTTGGGATGAGATCTCCAGCTCCCTCCTGGGAAGTAGTGAGACTCAAAAAGCAACTTATGTATTGTAAAGCACTTGATAAATGTACAGAGTCTCGGGGATACCTAAAAAGATGTATTGGTTATCTAGCCTTTGGGTCTACCTGTAACATATGGTAAATATATCTAAGATTGGGTACTCAATGCACATATCCACGTTTAGATAATATTTACAGTGGATTCTTTCGGTGTAATTGAAATTTTGAATATTTTTGAGATTCAGCACAAAGTATTTAGTGCTGCCTATTTTTGCATTTCTCTGGCAAAGAAAAAACTAAGGGATGGACTTCCTTCCCTTTGGAGAGCACTTAAGTGACTTTCAAGTGCATAGTGGGACAGGTTGTTGGACCTCTCTAAAGTCTGTCCATCTGTAAGAGTTTTGGTCCAGCATTTTGGCCTCTGAAGGCCTTGAAGGGCTAACGTTCTGTGCTCACAAGCCCCAGAAGGCAGGTGTTATAAGGATTTCAGAGGAGGAGGAAGAGTGCCGAGTGTGTAGAGACCTACCCGCTAGTAGGTAGGTCTTGGGAGCGGGTGTCTGCTTGTCTTTGCACGACTTTCCTTGTGCACAGTCAACGGGCTTACTCTAACCTTCTGCTTTTGTGGCTCTTTACATATACTATGAAACATGGACTGAACAAAGAAATAATAACCTATTATGTTGACAAAACCATCTGGATATATGTGACCAGAAGTAACTGGTCAGCTGAACAAAGAGGAGAAAAAGCTTGGCAAGTTTTAAAAGATATCCTTGTTTTGATGCCATTAACTTATTTAATAATATCATCCTAGATAATTTCCTTTGCAAGAGTAAATATTCCCCAAATCTGTCAAGGTTATATCAATAGCTAGACTTGTGAGTTCAGTTGTAAAATTTTTGAAATAAATTTTTTCAGGTACAGTATTGTAAATATTGGGTTGGCCAAAAAGTTTGTATTTTTTTTCATAAGATGGTACAGAAAAACCCAAAAGAACTTTTTGGCCAACCCAGTACCAGCAGTCTGATTCATCAAAGTGAACTTATGTCTCTTCATTATTCCTACTTGAATGCAAATAAAAGAGGGGGCTCTTCCTTCGTGTCCACCTGGCTGGCGTGGAGCACTCTCCTCCAGCAGCAGAGGCCCGGGATCGCCAGTGCAGCTGTGCCCACGGAGTTCTGCCCCTGGAGGGCTTTCTCTGACTTGCTAGCTCCTTATGTCATGAGTGATCACTGATGAGTGAGTTTGCCTTCGAAAATAAGTTGTGAAAGGAAGCTGTAAAGAATACTTTCATCTGATTCTCCTTGAGTTATTTCTTACAGATATCGTAGGGCATTTTTGTTGTTTGTTTGTGTTTCATGGCAGTGTTTCTTTGGTAAGTGGTTGAGCCTCTGAAGGTTACGCAGTGTTCTGTGTAACAGCTGTGATGCAGGCCTGTGTTCCCAAGTCCCCCTGCTGTTCCACAACAGGAATGGGGTGCGGGGTCCTCCTACCCCCAGTACGTGCCAGGTTGACTGGTTGGAAGCCATGCCCCAGGGAGTGAAGTGGGAGCCCCTTAGGATGCCTTTTTCCTTTTTCCAGTTTTAGACTTTCAGTTGTGTTCTTACTTGTGCCTCACCTGATCTACCTTTTAAGACAGAGGATTCCAGATGAGGCAGAGCAGATGGCCGTGACTTGAATGTGTCCCTAAGGTCCATGTTGATGCTGTCCGTGATTCTGGGATGGGCAGGGCCGTTCTGCTTGGGTGAGTGTCCTCAGTGGGGACAGTGCTTGTGGGAGTCATGAAGCCGAGGCTCCTCAGAGGCCTGGATCCCGAGTCACGATGGAAATCAGAGGACAGTACCTCTTACCTTTTTATTTTCCCACAGCGGGTGACTGAGTAAAAGAAATAGAAATGTGGTGTGAAGGTTGACCCTAAGTTTGGTTACTGAGAAAGCGGGCATTTCTGAAACAGCAGATTGGAAACCCCCTCCCCTGTGGTTGTGGTGATTCTCCGTTTAGAGTCGCTAGCTCATTCTGTCTACATGTGGTGTCCATTCCTGCCCAGCAGTAGGTTCACATGGGCTCCTGTGCTACTCTGGACGAAACCTCATTTCCTGGTGGCTCATGGCTCAGAGAACATGACAACTGTTTTGAGGCTCTGGAGGCTTCTGCAAGGACATGGTCCTTCTGATGAACTCTAGTATGTTATGGATTTACCCAATATTTTTCAAACCGAGGATAACAGTTTGTTACCAGGTTGTGAGATGCATTTTAGCAGGTCAGCACCAGCATTAAAATAGGTGAAACAGAAAATGTCGGAGTGCACGTCAGGTGATGAAGGCTAATATGGTTGCATGAAAAGTGCACTTTTACTGGGTTATGATTGTGCAACTTAGTTCTTAATGTGATTTGCATAAAAAGTGCTTGAAAAACACCAATTTAACTTATCCTTGTTTAGATGATAATCAGTTTAATTTCACAAGTGTGTTGTACATATAATGAGTAAACATATGTACTCTGTGTCAAGAATGATTTTTAAACACCTTCCTTTATTCATTTCACAATGTATGTGTATTTATCCTCGCTCGAGCCCTGGGTGGGATAGATAATTTGCAGAAAGCAGCGTAACAGCTCCACTCCCTGCCCCTGTGGGTGTGCTGCTCCCAGGCGGCGGGCCAGGCAGGTGCTGAGACCGGGGGGGGGGGGGGGGGGGGGGTGGTGGAGGCAATGCTTACTTGACCACGGAAAGATTCTGCAGTAAATCACATACGAGAATCAGATCAGTTATTTTGTTTGAAGGCAAGTGTATTCCTTGAAAAGGCAGTTTCATGAAAAAAATTATGTGAACTTAAAGAGCATCTAGAGCATGCAGATTCTCAAGGCAGGTAGTATCTTTACTATAAAAACCAAATTTTTACAAACTGGGTGATTGTATGTTGTACTGTTGGGTGGGAAGTCTGCATTAGTGGGCCATGCTAAGGGGTCTAAAATTTTATTCTTCTGGATTTGCTTCTGCTGCAATTTCTTTTTTTGTGGTTTTATGTTCACAG
Seq C2 exon
GTGTGCCTTCTTCCTCTTGCTCCTCCTCCTCACTGGAAAACATGCTTCTGTTTAACAGTCCTTCTGTGGGCCCTGATGCTCCCAAGATAGAGGACTTGAAGTGGCATTCTGCGTTCTTCAGGAAGCAAATGGGTACTTCCTTGGTTCACTCGCTGAAGAAGCCCCACAAGCGAGATCCATTGCAGAACAGCCCTGGGAGTGAAGGCAAAACCCAGCTAAAACAGCCAGACCTGGGGGGCAGAAGGGAGGGGACGGTGGGCCCAGAGAGCTTTCTGAGTTTTGAAAAGACGTTTGCAGAAGCACGGCTCGTATCAGCACAACAGAAAAACGGTGTGGTGATGCCAGACCACGGGAACAGGAGAGACCATCGTTTTCAGTGTGACCTCAGCAAGGGGGACGTAAAGGACAGACCTTTGAAACAGAGTCACAAGCCTCTGAGGTCCACAGACGTGTCCCAGAGGCACGTGGACCACGCCAGAGCTGCCGCCTCCCCTGGGGCGGGGCAGTCGGCGCCGGGCACGAGGAAGGAGGTGGTGCCCAAGTGCAACGGCTCCCTGATCAGAGTGAACTATAACCAGTCTGCAGTCAAAGTGCCTACGACACCGGCCAGCCCAGTGAAGAACTGGGGAGGATTCCGGATTCCAAAGAAGGGGGAACGGCAGCAGCAGGGAGAGGCCCCAGAGGCGGCCTGCCACCAGCACTCAGACTACTCCTACCTGGGCCTAGGCCGAGTTCCAGCCAAGGAGAGGGCAAAAAGCAAACTGAAAGCTGACAACGAGAATGACGGGTATGTCCCTGACGTAGAGATGAGTGACTCGGAGAGCGAGGCCTCCGAGAAGAAGTGCATCCACGCCAGCAGCTCTATCAGCAGGAGGACAGACATCATCAGGAGAAGCATTCTGGCCTCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017493:ENSBTAT00000032115:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.670
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development