MmuINT0118752 @ mm9
Intron Retention
Gene
ENSMUSG00000025764 | Phf17
Description
PHD finger protein 17 [Source:MGI Symbol;Acc:MGI:1925835]
Coordinates
chr3:41408392-41413842:+
Coord C1 exon
chr3:41408392-41408913
Coord A exon
chr3:41408914-41413724
Coord C2 exon
chr3:41413725-41413842
Length
4811 bp
Sequences
Splice sites
5' ss Seq
AGGGTAATG
5' ss Score
5.98
3' ss Seq
CTTTATTCTCTACATTCTAGGTT
3' ss Score
9.51
Exon sequences
Seq C1 exon
TGCTCTGTGAAGAACTGCCGGACAGCCTTCCACGTGACTTGTGCTTTTGACCGTGGCCTGGAGATGAAGACCATATTGGCAGAGAATGATGAAGTCAAATTCAAGTCCTACTGCCCAAAGCACAGCTCACACAGGAAACCCGAGGAGGGCCTGGGTGAAGGAGCAGCCCAGGAGAATGGGGCCCCTGAGAGTTCTCCCCAGAGCCCTCTGGAGCCCTATGGTAGTCTGGAGCCGAATCGAGAGGAGGCCCACCGGGTGAGTGTTCGCAAGCAGAAGCTACAGCAGCTGGAGGATGAGTTCTACACCTTTGTCAACCTGCTGGATGTGGCCAGGGCGCTGCGGCTGCCTGAGGAAGTGGTGGATTTCCTGTACCAGTACTGGAAGTTGAAGAGGAAGATCAACTTCAACAAGCCCCTCATCACCCCAAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAGGAGGCTGCAGCTGTTCACGCACCTGCGGCAGGACCTGGAGAGG
Seq A exon
GTAATGATTGACACCGACACCTTATAATGACTTAGAGAAGAAGATGTAAAGAGGCGGGCACTTGCCTAGAGATGATAGCCAGTCATTACTCTCAGATCCTTGTACACACTACAGCATGAGGTCATGTTGGTTAAACATATTTATGGGCTGGTAAACTCACTGCATTGTGCAAGACTGCCAGTGTGGGAGTTGCTTTGTGATTATTTCTCCTGTTAATCTTTACTGTTCTCCAAGATCAGATGGGGTGTATCTTCATCCCCTATTCCCTTGTCCTTATAGAGCTGGAGGGAATGGAGCACCAGGAACATGACCAAGGGCTTAACTCAGCAGTTTAGAGCCTGGTTTTGAGAACTGGGATGTATCTGAGTTATGGGGGATGGGGCAGCGGCAGGAATATTCCTTGTTTAACCTGGGGAGACATTTCCTAGGTGCTGATGAAGGGCTCGTTAGAGAGAGCCAAGCACTGCCTCCCATTGGCTCATCTTTGCTTCTAGGCTAATCCACAGGGGCATTCCCAGCTCTGTTGTGGAGAAGAACAGGCTGCAGGTGCTCATGTGTGTGCATGGACTTATATACACCTATTACAGAAGACAGTCTTGGCAGTGAGGTGCTAAGTCATCACAGAGGTTGTGCACATACAGAGTACGATTGTGTGTGGCGCGCATCCCTCTCTGGGTGATGTCTGCGTGTGGTGTGATTCCTGGTGCACAGGGCATTGGGTATGTCTGTGGAGCCCTTAGCAATCTCAGTACACTGCATACATAGACACACACGTGTTTATCACACTCCTGGGTTGCTGATTAAGTGGCTGTTGGCTGCCTGGAGCCTCAGCTGCTGGCACTCCCCTCAGCTGTTTGCTGCTTGGTGCCTCCCCCACTCTCCATTACCTCTGGAGTCCCCGGCTGGACCTTTTTTCCTGCTGCAGGAATAATTAGGAGTGGACTGTCCTCCCCAGGGTCTCCCACTCCCGTAGGTGGTTTTTGACCAAGGCTTGCTAATTGGGGATGCGTCTTGAGCACCTTCCATACCTACTCCCCTGACTGCTAGATACCTATTAAATTCATTAGTGTGGCAGAGATGGTATGCAAGTTGTCTGGCCTGAAGCAGCCTGTGCCGAAAGGCACCCAAGTGGCCTGAAACAGCTAATGCGTATCTCCCTCCAGCTCCTCACTTATTAGAGAGGAGTGATTCATCACCTGCTTGGCAACAGGATCTGACTCATAGGTGATTTGAGATGAGAGCGTAGGCAGGAGAGTGCAAATGTACTTGGCCAAAAGGATCAGTTCTCACAGAGGCTTGCACCACCGTGTTGGAGATGGTCATGCACGTATTTCTAAGTGCTCATTAGAGGCCCTTTTAGTTCATCATCTAATGCTGACTTCTTGAGATGTCCTTTTCTAGACCTTGTTAGGATTCCGGGTAAGGTGGTGGGTGCTAGTTAGGCTAAGGGGAGGTGGGAGCAGGTTGGTTAGGCTCCCACACAACCCCTGGTGGTCAGTTCGAAGAACCACATGCACTTGTGGTGTGTTCTTGAGAAAGGGATTCAGGGTTAATGGGTATTTTGTTGAGAAGCTACATCCTAACCCAACAACTGCTGTAATTGGGGTGCATGGAGTCAGATAGCCGTTGGGAGGGGAGGCGAGAAGTCTCATGTTTTGACTGTGTTTGTTTAACAATCACCACAGAATAAAAGTGTAGAAAATGCTTGGGTGTATTAACTCTTTTTCTGTATTTAAGTTACTGAGACTAACATATACTTCTAATTAAATTCTCAACTTTTTTTGGAGTCGTCATTTTGCGTTTAAGTAGAATAATGCCTGTGGTGCATAAGGGAATAAATCAGGATTTGTGTGCACCAGTGCCTGTGTATGTGTGTGTGTGTGTGGCATTACTCAACATTCAGTATTAAAGAGTCTACGGTTTTAATGCAGTCAGTGTCAGTTTAAAAGGGGCGTATTTATAATGACATGTTATGTTTTCCCCCTGCCATGAGGACTGTCTGAAAGCTGAAGTCTATGGCAGGCCCTGGAGAGTTGTACAGTGCTCTGCAATTATAAAAAAGTGTATCAGACCAAGGCCTTATCAGGGCAGCCATGACAAAAGAAAAAGTCCAAAGGTACAATTAACTTGTCTTCTCAGTAAGTTAGTGGTCTGTCTATTTTTATGAACTATCAGCACATGGTAGGCACTTGAGCCAGTCGATGTAGGCGACTGGACCGGAGGCATGTGGTCATTCCTGAACAAGTGAGTGGCACTCAGCACATGCACGTGACTCAGTGATTACGTTAATTGTTCTTTCTGGCAAATTAACACCTCGGGGGCCTTGCACACCTGGGTACCAGTTCTGGACCAGAAAGCTACGTGACAGGAATAGGTATCAGGAGGCTCTAAATGAGATGGTTGGTAATGTGGCGAGTGTAACTTCCAGCTTCCGGAGGCAGTCATCTTACTCTGGGATTCCTGACTACCTCCCTGAACTACTAGCTTGGATAAAGACATCCTGCACTTGCTGTAGTTGGTATGGAAAGGCTCCAAGTCCTGGGGGACAGTCCTGTGCATTTGTCACTCAGTGGAACATAACTTTTTGAAAACTCAGTGCGACCTCAGTTGTTGACTAAACAAAAGTGCACGCGAGGCTTCAATGTGGCAGGCACTGCGTAGGGCTCAGGAAACCCACTGCAAGGTCTCCTGCCTGTTCTGCTGCTGCTCTCAGGATGCAACAGTAACATTCTGGAAAACTAAGTGCAAACTGGAGTGGGGGCGGGGGCGGTCATGGTTTCTGTTTGTGAACTTGCTTTAAGGGGAAAGTTGACTTGGGTTTAGCCTGATGTCAGACGGTGAGGTTTGGGGGCCTGCTGCTAGCCGCTGAGGGAAGGTGAATTGAGTGGCCAAGCTCTCTGGGCAAAGACCATGTCTAGATTTCTGCCAAGAATTCCTTTTTGTTTTGTTTTGTTTATTTTGGGGTCAGCCAAAGCTGGATCAAATAGGCATTAGAGAGCACAACTGTAAATTATGGCTTTTTTTGTTTTGTGGGTTTATTGAAATGTTATTTATCTGAGGTCACTGGAAGGAAAAGGTTTTTTTGTTTTGTCTTTTCTCTCCTTACTAAGAGGCTGTGTTAAAGCCTTTGCTGGCACAGAAGCCATCAGAGCTGAGATTCCTGCCTTCCCTATTCATTTTCATGGGTCAGGCTTAAGATGTTTCTGCACACCTGAGTTGAATGTGAGCATGAACTATAATAATGCCCACTTCATGTCTCCCAAAATCAGACTTTTCATGGGAAGCTGGCTTATGTGTGTTGTCAGAGGTTGGAATTTGTGATGAGGGTTTAGGTTTGATCCTTTCTTTGTTTCTGAGTTCCCACCATAATCTCATCTGGGTGATAGAAGGTTCTGTTAGCCACTTTCAGCCCCAAGTTGGTTAGGGTTTTTCTAAAGAGCACCTTCTTCCTTGCCTGGGATTATGGCTATCCCTTAGGCAGGCAGGCCAAGTGACATATTTAATTCAGACAAGGAGCATAATTTTCTTTTTAATCCTTTATTAATTGAACCTAATAGTATTAAGAAGTTATTAATATAGAAATAGAGGCAGGAACTCCCTGATAGTGCATCATTAGGGTCAGCAAAATCCGGTAGTATTTCCCTTCATGGCCCATGTCCTCATGTAGGTCCCAGCCTGGAGCACAGCTGGGAGTGTGAGGATGGAGAAAGGTCTGAAGACTGAGGGGATATCTGTGTCAGCCAGTGTGCAAAACTGCATGGCTTGTGTCAGAGAAGCAGCTAGTGACCTTTGAACTTGCACTTACAGTATGATACAAGAAAGACTGCTCAAAAGGAGGATGCATTTTTAGCACACCCTAGATGCTAGCCAGTGGGGAGCATGTAGTCATTTTCCACTTCTGCCCCTGCTGCTGAGGTGGCTGAGGTCTTACGGGCATCTTTCTGAAGAAAGGTTCAACTGTTCAGCGGTGGGCTGCACCTGATGTTCTGTCTTTATGCCCAAAGGATCAGTGGGGTTTAGTGCCTTTATTCTTTACTTTTGTACTTAATGGTGACTGATGGTTTTAAGAGTAGGGAATAATGACTCTGGAAGCCTCGACTACTGACCACAAACTAATACATATGTGTGTGATTTGAAGAAGTCTTCTGTCCGATTGAGTGGGGAATCTCAGCACAGTGGTCTTTCCGTTACAGATAAACTAGAATGCGGGTGAGGTTAGTAGCAGGTTTAAACTGATGATCCATAGATCCAAAGATTTGCTGGGGATGCTGGGGCAGTTCCCCGGCATTTGCACACCTCACTGGAATGAATATGCTGTAGTGGCTGGCTATTTGCAAAGTTGTACCCAGTGAACCAAGCAGCTCATTTGATTTTCTAGAGGACTTTGTGCAGGGGTTCCTTTTATGCCATTGACCTGGAAGATACTTGATAGAAGTATTCAGGGAGGTTGCTTCATAATTGCTCAAACTATTTACAATAAGATTTCTGAGAAGACACTGTTGGATGGTAAGCGGAGCTCTCTGGCACAAGGCAGCAAGTCCTGATTAGATAGTAGGGGGTCTCTACATTGCAGACTGGTGGGGAAGAGTGGGACTCTGCCTATCTCTGCTACTCCCCCAGTGTAACTTCATGGTTGCTACAGATACGAGGGAATGAATAAGCAGAATTCTTCTAGTGGTAGGGTATGTTTTGATTTCAAATCTCTGTCAAGGTCTTAGTAGGGCCAGTATATCTCAGGTAAAGGAGAAATGAAAGCATTGAAGTATCGTTACCATATTGCTCACTTAGAATCTTTATTCTCTACATTCTAG
Seq C2 exon
GTTCGGAACCTCACTTACATGGTGACCCGCAGGGAAAAGATTAAACGGTCTGTGTGCAAAGTCCAGGAACAAATTTTCACTCAGTACACTAAGCTCTTGGAGCAAGAAAAAGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025764-Phf17:NM_001130186:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.287 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(35.4=23.0),PF087466=zf-RING-like=PD(61.1=12.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: