GgaINT0070280 @ galGal4
Intron Retention
Gene
ENSGALG00000010214 | JADE1
Description
jade family PHD finger 1 [Source:HGNC Symbol;Acc:HGNC:30027]
Coordinates
chr4:34030803-34037531:+
Coord C1 exon
chr4:34030803-34031333
Coord A exon
chr4:34031334-34037413
Coord C2 exon
chr4:34037414-34037531
Length
6080 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
CCACTTTTGATGCCTTCTAGGTG
3' ss Score
10.05
Exon sequences
Seq C1 exon
TGTTCAGTGAAGAACTGCAGAACAGCCTTTCACGTCACTTGCGCGTTTGACCGTGGCTTGGAGATGAAGACCATACTGGCAGAGAACGATGAGGTGAAATTTAAGTCATACTGTCCCAAGCACAGCTCCACCAAGAGAGCAGATGATGAGACCTTCAGTGACCACCTGTGTCAAGAGAATGGGAATGGGATTCAGGACAGCTCTCTTCCTGCCCACATTGACCCTTTCCACAGCATGGATCAAAACCAGGAGGAAGCCCACAGAGTCAGTCTTCGCAAGCAGAAGCTCCAGCAGCTGGAGGATGAATTCTATACCTTTGTCGAGTCTCTGGAAGTGGCTAAAGCACTGCAGCTGCCTGAGGAGCTGGTGGGATTCCTTTATCAGTACTGGAAGCTGAAAAGAAAAGCCAACTTCAATAAGCCATTGATTACCCCAAAGAAGGATGAGGAGGATAATCTGGCCAAACGAGAGCAGGATGTTCTATTCAGGAGACTGCAGCTCTTCACACATCTCCGGCAAGATCTGGAGCGG
Seq A exon
GTAAGCTCTGCACTGCCTGTGGTTGTGTAGCGTGTGCTGGGCTTCATAGCTGAGTTTCTAAACTGTGCATCCAGTTACTGCCATTGCATGCAGGCACTACGTGCTGTGTCCTAACTCAACGTTGTATTGTCAGCCTGGTAAAAGACAGTTAACACTAAATTTAGGGTTACACCAAGTACCATTTCCAAACAGGGGGTTAGTTCACAGGGCTCTTAGTTTGCAGTATACAGTATCCTTGTAACTGGATTGTGCACTCATGCTTTTTTTTTTTTTTTTTAACTGATTAAGACCAATGGCTGTGGAATGTACCACAACCCCCACATGGAACCTTTTCAGTCATTAAGGGCTTTCTCTGCTCCTTTCTGCCCAAGCAGGAAAGTATATGAAACCTACCTTGACTTAGGGCCAGTGTGCTTTTTGTTGACACAGCGTTGAGAGATGCTTCTGTTCAGTGCGTTCAAGGTTTATCTTCCCTTGGATTTGTTAAATAAATTAAGTTTATCATTAGGTTCTCTGGATCTGAAATTATTATGTGAGTATCCTTTCTGTTTTTTAAAGTGTGGTGTCAAAACAGGATACATTATTCTAGCATTGATTTTATATTTTGCCACTCTGTTCTCACTGACAGATACATCTGTCACTTCCCAACCATGAATGGAAGGAAGAGTGATCAGGTTGGCAAATCCCTCCAGTTAGATAAGGTCCATACACAAGAAGAAAAACAATCAAGTTAATAAGAGATTCCTATAAAACAGTTATCCTGTATGTGTTGGCCCTCCTACAGTTCTGTCTACCTAAAATGCAGTTCTATAGGAAATTCAAGTTAGCCTTGCACTGCTTAATACCTTTGAGAGAAAGAGAGTAAAAGAGATTAAAAGAGAGAGAGATCATCCATCCTGGGTCCAGCACCAGGCCTGGCTATGGGGGTGTTCTGTGTGACAAAGAAAACAAGCAGCAGCAGTAAGGAGTGGGAATAGCAGCAGCAAGACAGCAGCTGCCCTCAGCAGCCCCTATTTATAGTATCAAAGAAAAGAGGGAAGGGACTTTTTTTTTCCTCCCATGCTCCAGCCTCATTTTGGAATTGTAGTTGAATCCAGCTCTGGGGTTGGTTGGAAGACGAGACCTGAGCCATGTCTTGACTGAGACAAATGGACACCAGCCAAACCAAAGGAGGTGACACTTGACTTCTTTCTGTGACTTGACTGTTTCTCAGACATTGTTCTGGACCTTTCCAGGAGTGTTGAGACGTCAGTCAAAAGAAGGGAAGAAACACCTCGCTCCTCCCTGTGGCTTTACTGCCTTGAGGCATGGTCTGGGCTCACATTAACAGTCACTTGGGGCTCATCCCTTATAACATCCAAGAGAACTTGGATGACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGGTTCCTAAGTGTTTTTGATCCTCTTCAGGAAAACGCGCGTTAGCCTTCATTATGAATGACATCAGTGACAGTGTCATCCATCCAGAAACATTTTTAAGTGGTGTCATCTAGTTCACCTAATAACATCAGTAATTTTGTGGCCATAACATGTCTGTTGTTCTGTGGCTGGATCGCATAAGGTAAAGAACAAAGGACCGTGGACTGTATAGAGGAATCCCTTCTAATTCAAAGCCACAGCGTAATGATAGTGACTTAATATTTGTAATACTGGCTGTAGAAGATCTGGAAATCTAATACAGCAGACCTTAGCAAAAAAAACCTCACACATTAAAATAGACCTGCTCCTTAATCATAGAATAGCTTGGATTGAAAGGGACTTCAAAGATCATCCAGTGCAGAACGTCCTTGCTGGGGGCAGAGTTGCCACCCACTAGATGAGGCTGCCTGCTCTCAGTCTCCAACTGGGGTGATCAAGGAGAACACTACCTGTACTCCTGATACCCTCAACGTCCTTCCAAGGGATGTAAAGTCTCTTAATATTTTTGTAATTTCCCAGTTGCAGCCTCCTGTGACCAGGGTTGAGAGAGCAGGAGCAGATAGCAGTCCTCTGTCTTTAAGAGCCCTGGTCTCTTCCTTGTAGTCAGTGGTTGAACTAACATGGTTGCCCCTTTCAAGATCTGAACTGTTAGCTGCACCCTATCCTCTTTCCATCCCAGAGCTTTGTATCTGTTGCCTAGGAGCACTTCAAGAGCAAAGGGGTGGCTCCTCCTGCTCCAAGAAGAGACAAGCATCCAATTTCCCTCATCCTGCATGGTTTTTTTTGCTGTCTGTCTCTCGAGGGCTGGTAGTCTGCTTAGCTTCTTCCCCTTGCAGGGGCTTAAGGCAGGGCTATTGGTCTGCTTGTGTCACTGCACAGTACCACATATCAATCTCTCTCTTTGATTGCTGATTATTTCTGAGCATGGTGATTTCCTCTAGCAACCTGGCCCCCTGCTCATAGAGTTCATCAAGCTGGGCACACCCAGGACACCCCCCTCTGCCCTCCAGCCCTTGGGGGACCCCTAGATTCTGGAATCCCCACAACCAAAAGTCTGGGCAGCTCTGCTCTGTCCGTGGATTGTCAATCTGTATGCACGTGTCAGCCCAGGACTGTTGTGGCCCTCCAGTCTGGGTTTCCGCTTCAGCCCAACCATTGCAACAGGTGGTCTCCGTGTTTGTTTCAATAGAGTATGGCTCTCTGCTATTCTCAGACAAGAAGGAACTTTCTCCTTCACTGCCTGTGCCGTCTTCCTCCCCGTGCCATGTTTGCCCATCCTAATCACTGCCTTTGTATGTGCATGGGTGTCCTACTGCTGCTTCTGGCCTTGTTCACGCATCTTCAGCTGCACTCACCAGGCAGCAGTGGGGGATCCTGGCAGCTTTGGGCAGCTCTCTCCTCACCCTGAGGTCTCGGTTTCAGGACCCCTCTCGCACCACATTTCCCCCCCTCAACTCAGCCCACAAGTTTGTAGGCAACGGTGTGTCATGTTATACGCTGAATTCAGAGAGGAGCCTTGGAAACAGCCACACGAACTTTAGTGAGTCCCTATCACTGCTATTAAGCTGTAGGATGGTGGTGGTTGTGAGGCTAAGTTTTCATGTGGCTGTCTAAATCAGAGTCACATCGTAAGGGCAGAGATGTAACGTTCTTCTGAAAGACCAAGAGACAATCAAAGCAATCTCCTTGTTTTCAGTCCCTGCTGCCTCTGTTGTGCTGTGGTATGAATAGAAAGGCCTGCCCTTCACTTTGATCGCTCCGTGTGCAGTGGCAGGGTCATCAGAAAGAGCGATTCTGCTGAATGGCTCTTCACTTCTTCATACTACTAATAAAGTATAATTTCCTCTTATATCTCAAGCAATAAGAAACAAATAATGCTGAGCTATTTGAGAGCATTTAAGCATTCCCAGCACTCCTCGAAATTTGCACATATATATGATTCAGGTATTGTCTGAAAAGTGGATTTGTCACCTGATGTGCAGTAGGTCAGTAATCACACGCTCAGGTGAGTGTGTGGTCAATTTGCAGTATTCTGCAGGCATAAAACGTGTTTTCACCTCCCCACGAAGGGGTCTTTGGATCTTAGGATTACTTTTGACACAAATTTCACACTGTTGTGTAACACTCCTAGTGATCAGCATCATATTAATTCCTACAGCATATCTTTTCACTGCTTCAGTTAAAGCTTCAGTTCCCATGTTTGTCGTCTTATGAGTTCACTCCATTAATTCTTTCATCGTCTGCAGAGTTATAACACATTGTCAAACTGGAGTTAGCCATCATCCTTCAGCATTCCTCATGCATTTCAGTATTTTAGCCAACTCATTTTCTTTTTTTTTCCTGTATATTTAGGGTTATAGATATTTAAAGTTCTCACCGTGACTAAGGCTCCTACTGTTGTTGATAGAGCAGTTCTTTTTGTGGCTTCATGTGCTTTTCCATTTCCTCTAACTATATTGGTTTGTCCAGATTGATGGGCTTTGCAGTGTATCACTGCTATTTCTTTAGGTTTATTAACTGCTTGAAGTAATTTCATAATCTCTGTACTATAATTTATAGGATTTCCTTGGGAAGATAACAGTCATCTTTCTTTCTAGATTGCACCATGAGCTTGTATTATTCCAAAAGCATATTTTGAGTCAGTATAGACCTGAGCCCACTTTCCTTCTGATAGTTCCAGGGCTCGAGTTAAAGCAATTAATTAAGCTTTCTGAGCAGATGTGTTCACTGCTAGCAGTTTTGCCTCTGTTTCCTCTTGTAGACTGACAGTGGTGTACCCAGCCTTCTGTTCTCCTTTCACAGCAGAGCTGCATCCATCAGTAAACAGCTCCCAGCTGGGATTCTGTTAAGGAGTAACCTTCAGGTTCAGATAGGTGGAGTACACCTGTTGGATAGTTTGTAAACAATCGTGCCAGTTCTCTTTCATGTAAAGATAATGATTCTGGATTTGGGGCACTGGACGCTTCCCTTGCTGTATCCTCTTGTTCAAGCAGTACTGCTTCGTATTGCGCCATCCTGCTTAGGAATAACCAATAGTGTCCTTTCTGCTCCAGCACCGCTGCAACCGCATGTGGTACGCTAACAGTAATGTTCAGTCCCAAGGTCAGTTTTCTTGCCTCTTATATTAACAGCACAGCAGACTGACCCTTGTACGTAGCCTCCCCTCCTCCTCCAGAGCCTTTTCCAGCACAGTTCTTTTCCTCTGGCAAAAAGAGTTCAACAGCACTTGCGTATCCCTCATCTGGATTATGATTTTCAACTATCATTTTAAAAGATCAGTATGTTTTTTCAGGATTTTCACAGTAGGACCCAGCAGATCCTTTTCAGTTCATCAAATCCGAAGTAGAAAAAGTAACTCTGACACACCATTCTGGTCCTCCTGTCTGTCACAGTGGTGCCAATATTACAGGGTTCTGTTGTGCTCGATTTCTACGTGCAATAGGACTACATTCTCCACTCTGTTCACTGCTGTTGCCTCTCTCAGTCATCAGTGATGCATCTTCTTTATCCTTTTTTTTTTTTTTTTCAATATTGCAAGCAGAACAACATTGAGGTAATTCCTTTTTGTCATCATTAAGACATTCAAGTTAGATACCAACGGTTTACATTTTTTCCTTGTGTTGTGATCATTTCTCAAAGTAAAAAATCCGCATGTGAGATGTCACCCCGTTTATCCTGCCTTCTATAAAACTTAATAATTTCCAAGACTGTATTATGATTGGAATTCTGCATTTCTGGCCATTTCTCCTCATCCTCCAATTTATACTATAGCCACCATAGAGTACAATATCATCTTAATTTTCTCTGTTAGAGGATCCTCACCACACTTATCCCATGTTTCAGGATGAATCCTAGTAGAGAGCAAGAGGGGACCCCATAGACTGTCCTGTTCCCATACTGTTATTCAGAAAGAATGTTCTTACCAACCATGCTTTCTTGCACTCCAGTCATCACCGTCCAAACATGCACAAAGCTTACAAAATACCTATTATTACCATGCCCCACGCAATGTCTCCTTATCGTGTGCTGCACCTTGGGGTCACTTACCACTTCAGACAGGGATATTACTCACAGAGTCCTCTGAACAATAGGTTGGTGCACGCTTGGAGTTCAGAAAACAGTCTTTCCCCTCCAGCAGCCAGCAAGACTATCTGGGCAAAGCTTCACAGCTGTCCCATCGGGGTCACCAGAAAACTGCTGTCTGAAAAGTGGATTCAGTGCCTTGTGTGCAATATGTGAATGAACACACACTCAGGAGAGACATTGCTTTTTGGGTTATGGATGTGATTTTTGCTGTTATAATGAAGGTGGTTCAGCTAAGGATATGTGGACCTTGAGTTTTCTTGCCAAGTTGGCAACATCCTCAAAGCATCCTGATTTATGTCCTCGTCAAGGCCTACTGCCTCTGGCAAGTCTCTGCTTAAAGTATGTCAAGATGCCAAGTGTTTATTCTTCCGATACCTAATGCAATGTTAGCTCAGTTCTTAGAGTGAGCTTTCAATGCAAGTGTTCATAGAAGTTATTTCTGCAGTGTGGGCCTCCCAGATCTGATAAACTGTCAATTAAATGCTATTTAAGACTGTCTTCTAAGAAGTGTTTGGGAGACTCATCCACTTTTGATGCCTTCTAG
Seq C2 exon
GTGCGTAATCTCACTTACATGGTGACTCGAAGGGAAAAAATCAAGAGATCTGTTTGCAAAGTTCAAGAACAGATATTTAACATCTACGCAAAACAGTTGGAACAAGAAAGAGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010214:ENSGALT00000016607:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(35.4=22.6),PF087466=zf-RING-like=PD(61.1=12.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]