RnoINT0076936 @ rn6
Intron Retention
Gene
ENSRNOG00000014066 | Jade1
Description
jade family PHD finger 1 [Source:RGD Symbol;Acc:1306920]
Coordinates
chr2:128501731-128507096:+
Coord C1 exon
chr2:128501731-128502240
Coord A exon
chr2:128502241-128506978
Coord C2 exon
chr2:128506979-128507096
Length
4738 bp
Sequences
Splice sites
5' ss Seq
AGGGTAATG
5' ss Score
5.98
3' ss Seq
CTTTATTCTCTACATTCTAGGTT
3' ss Score
9.51
Exon sequences
Seq C1 exon
AACTGCCGGACAGCCTTCCATGTGACTTGTGCTTTTGACCGTGGCCTGGAGATGAAGACCATATTGGCAGAGAATGATGAAGTCAAATTCAAGTCCTACTGCCCAAAGCACAGCTCACACAGGAAACCTGAGGAGAGCCTGGGTGAAGGAGCAGCCCAGGAGAATGGGGCCACTGAGTGTTCTCCCCAGAGCCCTCTGGAGCCCTTTGCTAGTCTGGAGCAGAATCGAGAGGAGGCCCACCGTGTGAGTGTTCGCAAGCAGAAGCTACAGCAGCTGGAGGATGAGTTCTACACCTTTGTCAACCTGCTGGATGTGGCCAGGGCCCTGCGACTGCCTGAGGAAGTGGTGGATTTTCTGTACCAGTACTGGAAGCTGAAGAGGAAGATCAACTTCAACAAGCCCCTCATCACTCCAAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAGGAGGCTGCAGCTGTTCACGCACCTGCGGCAGGACCTGGAGAGG
Seq A exon
GTAATGATTGACACCGACACCTTATAATGACTTAGAGAAGAAGATGTAAAGAGGCGGGCCCTTGCCTAGAGATGATAGCCAGTCACTACTCTCAGATCCTTGTACACGCTACAGCATGAGGTCGTGTTGGTTAAACGTTTATGGTCTGGTAAACTCATTGCAGTGTGCAAGGCTGCCAGTGTGGGAGCTGCTTTGTGATTATTTCTCCCGTAATCTTTACTGTTCTGCAAGATCAGATGGGGTGTACCTTCATCCCGTTCCCTTGTCCTTGTAGAGCTGGAGGGACTTGAGCACCAGGAACATGACCATGGCTTGACTCAGCATTGTTTTTAGAACTGGGATGTGTCTGAATTATGGGGGCAGCAGTAGGGAAATTCTTGTTCAACCCGGGGAGACATTTCCTAGGAGTTGATGAGGGGCTCATTAGAGAGCTAAGCACTGCTTCCTGCTGACTCATCTTTGCTTCTAGGCTAATTCACAGGAGCGTTCCCAGCTCTGTTGTGGAGCAGAACAGGCTCTGGGTGCTGATGTGTGTGCATGGACTTAATACACACCTATTACAGAAGACAGTCTTGGCAGTGAGGTGCTAAGTCATCACAGAGGTTGTGTACATATAGTGTGCGATTTTGTGTGTGTGTACATCCCTCTCCGGCTTATGTCTTTGTGTGTGGGTGATTCCTGGTGCACAGGGCATTGGGTTTGTCTGTGGAGCCCTTAGCAATCTCAGTACACTACATACATATACACACGAGTTTATCACACTCCTGGGTTGCTGATTAAGTGGCTGTTGGCAGCCTGGAGCCTCAGCTGCTGACACTTCCCTCAGCTATTTGTTGCTTGGTGCCTCCCCCACCCTCCATTACCTCTGGAGTCCCTGTCTGGACCTTTTTTCCTGCTACAGGAATAATTAGGAGTGGACTGTCCTCCCCAGGGTCTCCAGCTCCCGTAGGTGGTTTTTGACCAAGGCTTGCTAATTGGGGCTGTGTCTTCAGCACCTTTCACACCTACTCCCCTGACTGCTACCTACCTATTAAATTCATTAGTGTGGCAGAGATGGTATGCAAGTTGTCTGGCCTGAAGCAGCCTGTGCCGAAAGGTACCCAAGTGGCCTGAAACAGCTAATGCATATCTCCCTCAAGCCCCTCACTTATTAGAGAGGAGTGATTCATCACCTGCTTGGCAACTGAATCTGACTCATAGATGATTTGAAATGAGAGTGTAGGCAGGGGAGTGCAAAAGTACTTGGCCAAAAGGATCAGTTCTCACAGCGGCTTGCACCACCTTTTTAGAGATGGGGTAGTCATGAAAGTATTTGTTAAGTGCTCATTAGAGGCCCTTTTAGTGCATCATCTAATGCTGGCTTCTTGTGATCCTTTTCTAGACTTTGATAGGGTAAGGTGGTGGGTGTTAGGCTAAGGGGAGGTGGGAGCAGGTCGGTGAGGCTCTTACAGGCCCCCTGGTGGTCAGTTCAAAGAACCACATGCACTTGTGTGCTATTGAGGAGAAAGGGATTCAGGGTAAATGAGTATTATGGTGAGAAACTACTATCGTAACCCAACAACTGCTGTAATTGGGGTGCATGGAGTCAGACAGTTCTTGGGAGGGAAGGCAAGAAGTCTCATGTTTTGACTGTGTTTGTTTCACAATCACCACAGAATAAAAGTGTAGAAAATGCTTGTGGTGTATTAACTCTTTTTCTGTATTTAAGTTACTGAGATTAACATATACTTATAATTAAATTCTAAACTTTTCGGAGTCGTCATTTTACTTTTAAGTAGAATAATGCCTACGATGCATAAGGGAATAAATCAGGATTTGTGTGCAAGAGTGCCTGTGTATGTGTGTGTGGGTGGCATTACTTAACATTTATTATTAAAAAGTCTAAAGTTTTAATGCATTCAGTGTCAGTTTAAAGTGGGTTTATTTATAATGACGAGTTATGTTTTCCTCCTTTGCCATGAGGGCTGTCTGGAAGCTAAAGTCTATGCAGGCCCTGGAGAGTTGTACAGTGCTTTACAATTATAAACGAGTGCATCAGACCAAGGGCAGGACTGACAAAAGGAAAGATCCAAAGTTACAATTCACTTGTTTTCTCAAAAAGTTAGTGATCTGCCTATTTTCATGAACTATTGGTACATGATAGGCACTTGAGCCAGTCGATACAGGTGACTGGACTGGAGGCATGTGCTCGTCCCTGAACAAGTGAATAGCACTCATCATGAATGCAGGTGACTCAGTGATTATGTTAATTGCTCTTTCTGGCAAATTAACAAACACCTTGGGGGGCTTGCACACCTGGGTACCAGTTCTGGACCAGAAAGCTACATAACGGGAATAGATAGCAGGAGGCTCTAAAGAGAGATGGTTGGTGATGATGAGTGGCACTTCACTGTCACCTCACTCTGGAACTTCTGACTACCTCACTGGATTACTAGCTTGGATAAAGACATCATTCTTCACTACCTGTAGTTTGTATGGAAAGTCTCCAAGTCCTGGGGGTCAGTCCTGTGCACTTGTGCCTCAGTGGAACAGAACTTTTTGAAAACTCAACGAGACTTCAGTTGTCCCTGATCAAAAATGCATGGGAGGCGCTAATATGGCAGGCATTGCATAGGGCTCAGAAAACCCACTGCAACTATTCCTGCCTGTTTTGCTGCTTGTTCTCAGGGTGCAACAGTAACACTCTGGAAACTTAAAAAGTACAAACTGGAGTGGGGGCGGGGGGATCATCTTTGGTTCTCTTTGCGAACTTGCCTTAAGGGGAACGTTGACCTGGATTTGGTAGGTTTCGGTGCCTGCTGCTGGCAGCTGAGGGAAGGTGAATTGGTTGAGTAGTCAAGCTCTCTGGGCAGAGACCACGTCTAGATTTCTGACAAGAATTCCTTCTTTTGTTGTTTTGTTTACTTTGGGGTACTTAGCTCTGCCGTGGTCAGCCAGAGATGGACCAGTTAGGCCTTATGGATCACAACTGGAAGTTACGGCCTTTTTACTTTGTGGGTTGATTTAGATGTTATTCTTCTGAGGTCACTGGAAAGAAAGGCTGTTTGTTTTTTTTTCCCTTCACCAAGGCTATGAAAGCCTTTCCTGGCATGGAAGCAACCAAGGTTGAGATTCCCTGCCTTCCCTTTATTTTCATGGATCAAACTTGAGTTGAATGTGAGTGTAGACTATACTGTCCATTTCATGTTTTCCCAGAATCACATTCTTCATGGAAAGCTGGCCTCTTTGTGCTGTCAAAGGTTTGAGTTTGTGATGAAGGTTTAGGTTTGATTTCTTTGTTTCTGAGTTTCCACCCATAATCTCATCTGGGTGGAATACTACTTATCAGAGAGAAAATTCTGTTAGTCACTTCCAGTCCCAAGCTGGTTAGGGTTTCTCTAAAGAGCACTTAACTTCCTTGCCTGGGTTTGGCTACCTGCTAGGCAGGCCCAATGACATTATATTTAACTCAGACTCGAGTGATTTTCTTTTTAATCTTTTATTAACCAAAACAGATTCTAATAGTATTAATCATAAGTGATTAGGGTAGAAATAGAGACAGGAAGACCCTGATGATGAATATTAGGGTCAGCAAAGCCCAGTAGTGTTTCCCTTCTCCCATATCCTCATGTAGGTCCCAGCCTTGAGCACAGCTGGGATTGTGAGGATGGAGAAAGATCTGAAGACTGAGGGAATATCTGCATCAGCCAGTGGGCAAAAATGCATGGCTTGTGCCAAAGATGCAGCTGGTGACCTTTGAACTTGCACTTACAGTAGCATATAAGAAAGACTGCTCAAAAGGATGTATTTTTAACATGCCATTGATGGTAGCCAGTGGGGAGCATGCAGTTACTTTCCACGTCTGCCACTGCCACTGAGGGTGGTTGAGGTTTTATGGGCGTCTTCCTGAAGAAAGGTTTAATTGTTCAGCAGTGGACTGCACCTATGTTCTGTCTTTAGGCTCATGCAATTTAGAACCAAGGACCAGTGGGGTTTAGTGCCTTTAGTTCTTTAATTTTGTATTTAGTGATGACTGGGAAGCCTAGATTACTTACGACAAACTAATAGATGTATATATGATTTGAAGAGGTCTTAGAACAGATTGAGTGGGGAATCTCAGCACTTGGTCCTTCAGTTACAGATGAACTAGAATGAGAATGAGGTTAGTAGCACTTTGAAACTGAAGATCCATAGATGTAAAGATTTGCTGGGGATGCTGGGACAATTCCCAGGCATTTGGACACCTCACTGGAATCTGCAATGGCTGGCTATTTGCAAAGTTGTGCCAGTGGACCAAGCAGCTCATTTGATCTTCCAGAGGACTTTGTGCAGGGGTTCCTCTTATGCCATTGACTTGGAAGATGCCTGACACAAATGTGCAGGGAGGTTGATTCATAACTGCTCAAACCATTGACAATAAGTTTTCTGGGAAGATAATGTTGGTAAGCAGAGCTCTGTGGCACAAGGCAGCAAGTCCTGATTAGATAATGGGGTTCTCTACACTGCAGACTGGAGGGGAGTAGTGGGATTCTGCCTATCTCTGCCACTCCTCTGGTGTCACTTCATGGCTGCTACAGACACAAGGGAATAAATAAGCAGAATCTTTCTAGTGGTAGGGTAAAATGCTTAAAGCATGTTTTCATTTCAATGTCTGTCAAGGCCCGAGTAGGGCTGGTATGTCTCAGGTAAAGGAGAAATGGAAGCACTGAAGTATTGTTGCCGTATTGCTCACTTAGAATCTTTATTCTCTACATTCTAG
Seq C2 exon
GTTCGGAACCTCACTTACATGGTGACCCGCAGGGAAAAGATTAAACGGTCTGTGTGCAAAGTCCAGGAACAGATTTTCAGTCTTTACGCTAAGCTCTTGGAGCAAGGAAAAGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014066:ENSRNOT00000018872:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(33.0=21.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]