RnoEX0045531 @ rn6
Exon Skipping
Gene
ENSRNOG00000014066 | Jade1
Description
jade family PHD finger 1 [Source:RGD Symbol;Acc:1306920]
Coordinates
chr2:128501731-128514291:+
Coord C1 exon
chr2:128501731-128502240
Coord A exon
chr2:128506979-128507096
Coord C2 exon
chr2:128510572-128514291
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTTTATTCTCTACATTCTAGGTT
3' ss Score
9.51
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
CAGCCTTCCATGTGACTTGTGCTTTTGACCGTGGCCTGGAGATGAAGACCATATTGGCAGAGAATGATGAAGTCAAATTCAAGTCCTACTGCCCAAAGCACAGCTCACACAGGAAACCTGAGGAGAGCCTGGGTGAAGGAGCAGCCCAGGAGAATGGGGCCACTGAGTGTTCTCCCCAGAGCCCTCTGGAGCCCTTTGCTAGTCTGGAGCAGAATCGAGAGGAGGCCCACCGTGTGAGTGTTCGCAAGCAGAAGCTACAGCAGCTGGAGGATGAGTTCTACACCTTTGTCAACCTGCTGGATGTGGCCAGGGCCCTGCGACTGCCTGAGGAAGTGGTGGATTTTCTGTACCAGTACTGGAAGCTGAAGAGGAAGATCAACTTCAACAAGCCCCTCATCACTCCAAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAGGAGGCTGCAGCTGTTCACGCACCTGCGGCAGGACCTGGAGAGG
Seq A exon
GTTCGGAACCTCACTTACATGGTGACCCGCAGGGAAAAGATTAAACGGTCTGTGTGCAAAGTCCAGGAACAGATTTTCAGTCTTTACGCTAAGCTCTTGGAGCAAGGAAAAGTTTCAG
Seq C2 exon
GTGTGCCTTCTTCCTGCTCCTCACTGGAGAACATGCTTTTGTTCAACAGTCCTTCTGTGGGCCCCAATGTTCCCAAGATAGAGGACTTGAAGTGGCATTCTGCATTCTTCAGGAAACAAATGGGTACTAACTTGGTTCATTCACTGAAAAAGTCCCATAAGCGAGATGCATTGCAGAACAGTTCTGGGACTGAGGGAAAGACCCTGCTAAAGCAGCCAGGTCTGTCTGGTAGGAGGGAGGGGTCGGGGGTCCCAGAAAGCCTTCTGAGCTTTGAAAAGACTTTTGCAGAAGCACGTCTCATATCATCAGCACAACAGAAAAATGGTGTGGTGACCCCAGACCATGGGAAAAGAAGAGACAATCGTTTTCATTGTGATCTTGTTAAAGGAGACTTAAAGGACAAATCTTTTAAACAGAGTCACAAGCCTCTCAGGTCTACAGACACATCCCAGAGGCATCTGGACAACACAAGAGCTGCCACCTCCCCTGGAGTAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014066_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.000 C2=0.743
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(33.0=21.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTAGGAGGCTGCAGCTGTT
R:
GGTCTTTCCCTCAGTCCCAGA
Band lengths:
252-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]