GgaEX0015238 @ galGal4
Exon Skipping
Gene
ENSGALG00000010214 | JADE1
Description
jade family PHD finger 1 [Source:HGNC Symbol;Acc:HGNC:30027]
Coordinates
chr4:34030803-34039693:+
Coord C1 exon
chr4:34030803-34031333
Coord A exon
chr4:34037414-34037531
Coord C2 exon
chr4:34038392-34039693
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCACTTTTGATGCCTTCTAGGTG
3' ss Score
10.05
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
ACGTCACTTGCGCGTTTGACCGTGGCTTGGAGATGAAGACCATACTGGCAGAGAACGATGAGGTGAAATTTAAGTCATACTGTCCCAAGCACAGCTCCACCAAGAGAGCAGATGATGAGACCTTCAGTGACCACCTGTGTCAAGAGAATGGGAATGGGATTCAGGACAGCTCTCTTCCTGCCCACATTGACCCTTTCCACAGCATGGATCAAAACCAGGAGGAAGCCCACAGAGTCAGTCTTCGCAAGCAGAAGCTCCAGCAGCTGGAGGATGAATTCTATACCTTTGTCGAGTCTCTGGAAGTGGCTAAAGCACTGCAGCTGCCTGAGGAGCTGGTGGGATTCCTTTATCAGTACTGGAAGCTGAAAAGAAAAGCCAACTTCAATAAGCCATTGATTACCCCAAAGAAGGATGAGGAGGATAATCTGGCCAAACGAGAGCAGGATGTTCTATTCAGGAGACTGCAGCTCTTCACACATCTCCGGCAAGATCTGGAGCGG
Seq A exon
GTGCGTAATCTCACTTACATGGTGACTCGAAGGGAAAAAATCAAGAGATCTGTTTGCAAAGTTCAAGAACAGATATTTAACATCTACGCAAAACAGTTGGAACAAGAAAGAGTTTCAG
Seq C2 exon
GTGTGCCTTCTTCATTCTCCACAATGGAAAACGCAGTGTTGTTCAATAGTCCATCTTTGGGTCCCAATGCCCCTAAGATAGAGGATTTGAAATGGCATTCAGCATTCTTCAGGAAACAAATGGGCACATCTCTGACACACTCTTTGAAAAAATCACACAAAAGAGACGGAGTAAGTAATAGCTCTGGGAACAGTAGCAAGTCCATGCTGAGGCAGCCCAGCCAAAGGGGAGATGGTGCAACTCCAGGAAGCTTGTTAAATTTTGACAAGAGCTTTGCAGAAACACGGATTGTATCAGCACAGCAGAAAAATGGCATAGTTATGCCAGACCACAGAAAAAGAAGAGACAATCTTCCACAGTGCGAGGTAATCAAGACAGAACTGAAGGAAAAAACTAAACATAACCACAAACCACTGAGACCCACGGAACTCTCTCAGAGGCAATCAGAAAACAAAAGGGCTGTGAACCACTCCAGTGGTAGGTCAGCGCCTGGCACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010214_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=0.025 C2=0.833
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(35.4=22.6),PF087466=zf-RING-like=PD(61.1=12.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACTGCAGCTCTTCACAC
R:
ACTTGCTACTGTTCCCAGAGC
Band lengths:
245-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]