MmuEX0034730 @ mm10
Exon Skipping
Gene
ENSMUSG00000025764 | Jade1
Description
jade family PHD finger 1 [Source:MGI Symbol;Acc:MGI:1925835]
Coordinates
chr3:41604470-41616864:+
Coord C1 exon
chr3:41604470-41604991
Coord A exon
chr3:41609803-41609920
Coord C2 exon
chr3:41613123-41616864
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTTTATTCTCTACATTCTAGGTT
3' ss Score
9.51
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
CAGCCTTCCACGTGACTTGTGCTTTTGACCGTGGCCTGGAGATGAAGACCATATTGGCAGAGAATGATGAAGTCAAATTCAAGTCCTACTGCCCAAAGCACAGCTCACACAGGAAACCCGAGGAGGGCCTGGGTGAAGGAGCAGCCCAGGAGAATGGGGCCCCTGAGAGTTCTCCCCAGAGCCCTCTGGAGCCCTATGGTAGTCTGGAGCCGAATCGAGAGGAGGCCCACCGGGTGAGTGTTCGCAAGCAGAAGCTACAGCAGCTGGAGGATGAGTTCTACACCTTTGTCAACCTGCTGGATGTGGCCAGGGCGCTGCGGCTGCCTGAGGAAGTGGTGGATTTCCTGTACCAGTACTGGAAGTTGAAGAGGAAGATCAACTTCAACAAGCCCCTCATCACCCCAAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAGGAGGCTGCAGCTGTTCACGCACCTGCGGCAGGACCTGGAGAGG
Seq A exon
GTTCGGAACCTCACTTACATGGTGACCCGCAGGGAAAAGATTAAACGGTCTGTGTGCAAAGTCCAGGAACAAATTTTCACTCAGTACACTAAGCTCTTGGAGCAAGAAAAAGTTTCAG
Seq C2 exon
GTGTGCCTTCTTCCTGCTCCTCCGCACTGGAGAACATGCTTTTTTTCAACAGTCCTTCTGTGGGCCCCAATGCTCCCAAGATAGAGGACTTGAAATGGCATTCTGCATTCTTCAGGAAACAAATGGGCACTTCCTTGGTTCATCCACTGAAAAAGTCCCATAAACGAGATGCAGTGCAGAATAGTTCTGGGACCGAGGGCAAGACCTCGCATAAGCAGCCAGGTCTTTGTGGTAGAAGGGAGGGGCTGGAGGTCTCAGAAAGCTTGCTGAGCTTAGAAAAGACTTTTGCAGAAGCACGTCTCCTATCATCAGCACAACAGAAAAATGGTGTGGTGACCCCAGACCATGGGAAAAGAAGAGACAATCGTTTTCATTGTGATCTCGTTAAAGGAGACTTAAAGGACAAATCTTTTAAGCAGAGTCACAAGCCTCTCAGGTCCACAGACACATCCCAGAGGCATCTGGACAACACAAGAGCTGCCACCTCCCCTGGAGTAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025764_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=0.000 C2=0.686
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(35.4=21.9),PF087466=zf-RING-like=PD(61.1=12.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCAACCTGCTGGATGTGG
R:
AAAGCATGTTCTCCAGTGCGG
Band lengths:
257-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types