BtaEX0018650 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017493 | JADE1
Description
jade family PHD finger 1 [Source:HGNC Symbol;Acc:HGNC:30027]
Coordinates
chr17:29368416-29378363:-
Coord C1 exon
chr17:29377842-29378363
Coord A exon
chr17:29372663-29372780
Coord C2 exon
chr17:29368416-29369326
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTTTATTCTCTACGTTCCAGGTT
3' ss Score
8.68
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
CAGCCTTCCACGTGACCTGTGCGTTTGACCGGGGCCTAGAGATGAAGACTATCTTGGCAGAGAACGACGAAGTCAAGTTCAAGTCCTACTGTCCGAAGCACAGCTCTCACCGCAAAGCCGAGGAGGGCCTTGGTGAGGGGACTGCTCAGGAGAATGGTGCTCCCGAGTGCTCCCCGCGGGATCCGCTGGAGCCCTTCGCTGGCCTCGAGCAGAATCGGGAGGAGGCCCACCGGGTCAGCGTCCGCAAGCAGAAGCTGCAGCAGCTGGAGGACGAATTCTACACGTTCGTCAACCTGCTGGATGTAGCCAGGGCCCTGCGGCTGCCCGAGGAGGTGGTGGACTTTCTGTACCAGTACTGGAAGTTGAAGAGGAAGGTCAACTTCAACAAGCCCCTCATCACTCCAAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAGGAGGCTGCAGCTGTTCACGCACCTGCGGCAGGACCTGGAGAGG
Seq A exon
GTTCGGAACCTCACTTACATGGTGACCCGCAGGGAAAAGATTAAACGATCTGTGTGCAAAGTCCAGGAACAGATATTCAATCTTTACACTAAGCTTTTGGAGCAAGAAAGAGTTTCAG
Seq C2 exon
GTGTGCCTTCTTCCTCTTGCTCCTCCTCCTCACTGGAAAACATGCTTCTGTTTAACAGTCCTTCTGTGGGCCCTGATGCTCCCAAGATAGAGGACTTGAAGTGGCATTCTGCGTTCTTCAGGAAGCAAATGGGTACTTCCTTGGTTCACTCGCTGAAGAAGCCCCACAAGCGAGATCCATTGCAGAACAGCCCTGGGAGTGAAGGCAAAACCCAGCTAAAACAGCCAGACCTGGGGGGCAGAAGGGAGGGGACGGTGGGCCCAGAGAGCTTTCTGAGTTTTGAAAAGACGTTTGCAGAAGCACGGCTCGTATCAGCACAACAGAAAAACGGTGTGGTGATGCCAGACCACGGGAACAGGAGAGACCATCGTTTTCAGTGTGACCTCAGCAAGGGGGACGTAAAGGACAGACCTTTGAAACAGAGTCACAAGCCTCTGAGGTCCACAGACGTGTCCCAGAGGCACGTGGACCACGCCAGAGCTGCCGCCTCCCCTGGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017493-'28-13,'28-11,32-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=0.000 C2=0.670
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(35.4=23.0),PF087466=zf-RING-like=PD(61.1=12.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAACCTGCTGGATGTAGCC
R:
CAGTGAGGAGGAGGAGCAAGA
Band lengths:
248-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development