DreEX0040433 @ danRer10
Exon Skipping
Gene
ENSDARG00000033707 | jade1
Description
jade family PHD finger 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5648]
Coordinates
chr17:26823841-26829627:+
Coord C1 exon
chr17:26823841-26824374
Coord A exon
chr17:26826093-26826210
Coord C2 exon
chr17:26827535-26829627
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCACATATATGTGTGTTCAGGTG
3' ss Score
7.14
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
TGACCTGTGGTCTGCATTGTGGGCTGAAGATGAACACGATCCTCACAGAGGCGGATGAAGTCAAGTTCAAGTCATTTTGTCCCAAGCACTCTGGCCTGGATTGGAACGAGGAAGAGGGCGATGATGACAGACCTGTGAAGGTCCCAACCAGGGAAGACAGAAGCAGAAATAGAGGAATAGATTTCTCTGCTTCTTCCCAAACCAGACTCTCGCAGAACCCAGAGGAGACCAGACTCAGTGAGCGAAAGCTTCGAGTACAGCAGCTGGAGGACGAGTTCTATCGCTTCGTCGCTGCTGATGAGGTTGCCGAACATCTGCAGCTTCCTCTTGAGATGGTGGACTTCTTGTTTCAATACTGGAAGTTGAAAAGAAAGGTGAACTTTAACCAGCCCCTCATCATGCCGAAGAAAGAGGAGGAAGACAGTCTTGCCCGACGAGAACAGGAAGTGCTTTTAAGGCGACTACGACTCTTTACGCATTTGCGACAGGATCTGGAGAGG
Seq A exon
GTGCGTAATTTGACGTATATGGTCAGCCGACGGGAGAGGATTAAACGGACCTTGTGCCGAGTGCAGGAGCAGATCTTTCATCACCACGTCAGGCTGCTGGAGCAGGGCCGCGTCACTG
Seq C2 exon
GTATATCCTCTACTAGACGTTTGGAGGAGGCTATGTTTTATTTCCGTACGACGCCACCTGTGCCAGCATCTCCTCAGCCTCTGAAGGGCCACTGTGGGCAGAACAGCACACTGAGCTCCAGCGAGAAGGGAAGCAACTCTTACAGATCCTCAAAGCATATTGAAGCAGACAAGCCTGCAAAGATGCTCATGGACGGCGTTCCCAGTTCTGGAGACTCTGTGAGAAGCGAGACAGTGATGTCTGCTTCATCTAGACGTTCTGAGGGCAGGACGAGGAGCGGTGAGTCTCACAGAAAAGAGGAGGAAAGTGAGCGTCCTCTGGAGGACAGGAGGAGAAAGAGCAAGCTATGGGACCAGGTGTCTATTAAAGACAAACTGAGGCATGCAAAGTCTATGGAGGACACGCTGAGCAGTGAGACAGAGCTCGACACAATGGATGACAGATTGCTGCTGTCTCACACTAACGCTAATTCTGTAGCCACTGCTCCAAACATGTACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033707-'18-16,'18-14,19-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.000 C2=0.959
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(35.4=22.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTGCGACAGGATCTGGA
R:
TCGCTTCTCACAGAGTCTCCA
Band lengths:
254-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]