GgaEX0015238 @ galGal3
Exon Skipping
Gene
ENSGALG00000010214 | PHF17
Description
NA
Coordinates
chr4:35728652-35737226:+
Coord C1 exon
chr4:35728652-35729182
Coord A exon
chr4:35736148-35736265
Coord C2 exon
chr4:35737126-35737226
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCACTTTTGATGCCTTCTAGGTG
3' ss Score
10.05
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
ACGTCACTTGCGCGTTTGACCGTGGCTTGGAGATGAAGACCATACTGGCAGAGAACGATGAGGTGAAATTTAAGTCATACTGTCCCAAGCACAGCTCCACCAAGAGAGCAGATGATGAGACCTTCAGTGACCACCTGTGTCAAGAGAATGGGAATGGGATTCAGGACAGCTCTCTTCCTGCCCACATTGACCCTTTCCACAGCATGGATCAAAACCAGGAGGAAGCCCACAGAGTCAGTCTTCGCAAGCAGAAGCTCCAGCAGCTGGAGGATGAATTCTATACCTTTGTCGAGTCTCTGGAAGTGGCTAAAGCACTGCAGCTGCCTGAGGAGCTGGTGGGATTCCTTTATCAGTACTGGAAGCTGAAAAGAAAAGCCAACTTCAATAAGCCATTGATTACCCCAAAGAAGGATGAGGAGGATAATCTGGCCAAACGAGAGCAGGATGTTCTATTCAGGAGACTGCAGCTCTTCACACATCTCCGGCAAGATCTGGAGCGG
Seq A exon
GTGCGTAATCTCACTTACATGGTGACTCGAAGGGAAAAAATCAAGAGATCTGTTTGCAAAGTTCAAGAACAGATATTTAACATCTACGCAAAACAGTTGGAACAAGAAAGAGTTTCAG
Seq C2 exon
GTGTGCCTTCTTCATTCTCCACAATGGAAAACGCAGTGTTGTTCAATAGTCCATCTTTGGGTCCCAATGCCCCTAAGATAGAGGATTTGAAATGGCATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010214-'7-10,'7-8,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(35.4=22.6),PF087466=zf-RING-like=PD(61.1=12.4)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGTGGCTAAAGCACTGC
R:
ACACTGCGTTTTCCATTGTGG
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]