MmuINT0118752 @ mm10
Intron Retention
Gene
ENSMUSG00000025764 | Jade1
Description
jade family PHD finger 1 [Source:MGI Symbol;Acc:MGI:1925835]
Coordinates
chr3:41604470-41609920:+
Coord C1 exon
chr3:41604470-41604991
Coord A exon
chr3:41604992-41609802
Coord C2 exon
chr3:41609803-41609920
Length
4811 bp
Sequences
Splice sites
5' ss Seq
AGGGTAATG
5' ss Score
5.98
3' ss Seq
CTTTATTCTCTACATTCTAGGTT
3' ss Score
9.51
Exon sequences
Seq C1 exon
TGCTCTGTGAAGAACTGCCGGACAGCCTTCCACGTGACTTGTGCTTTTGACCGTGGCCTGGAGATGAAGACCATATTGGCAGAGAATGATGAAGTCAAATTCAAGTCCTACTGCCCAAAGCACAGCTCACACAGGAAACCCGAGGAGGGCCTGGGTGAAGGAGCAGCCCAGGAGAATGGGGCCCCTGAGAGTTCTCCCCAGAGCCCTCTGGAGCCCTATGGTAGTCTGGAGCCGAATCGAGAGGAGGCCCACCGGGTGAGTGTTCGCAAGCAGAAGCTACAGCAGCTGGAGGATGAGTTCTACACCTTTGTCAACCTGCTGGATGTGGCCAGGGCGCTGCGGCTGCCTGAGGAAGTGGTGGATTTCCTGTACCAGTACTGGAAGTTGAAGAGGAAGATCAACTTCAACAAGCCCCTCATCACCCCAAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAGGAGGCTGCAGCTGTTCACGCACCTGCGGCAGGACCTGGAGAGG
Seq A exon
GTAATGATTGACACCGACACCTTATAATGACTTAGAGAAGAAGATGTAAAGAGGCGGGCACTTGCCTAGAGATGATAGCCAGTCATTACTCTCAGATCCTTGTACACACTACAGCATGAGGTCATGTTGGTTAAACATATTTATGGGCTGGTAAACTCACTGCATTGTGCAAGACTGCCAGTGTGGGAGTTGCTTTGTGATTATTTCTCCTGTTAATCTTTACTGTTCTCCAAGATCAGATGGGGTGTATCTTCATCCCCTATTCCCTTGTCCTTATAGAGCTGGAGGGAATGGAGCACCAGGAACATGACCAAGGGCTTAACTCAGCAGTTTAGAGCCTGGTTTTGAGAACTGGGATGTATCTGAGTTATGGGGGATGGGGCAGCGGCAGGAATATTCCTTGTTTAACCTGGGGAGACATTTCCTAGGTGCTGATGAAGGGCTCGTTAGAGAGAGCCAAGCACTGCCTCCCATTGGCTCATCTTTGCTTCTAGGCTAATCCACAGGGGCATTCCCAGCTCTGTTGTGGAGAAGAACAGGCTGCAGGTGCTCATGTGTGTGCATGGACTTATATACACCTATTACAGAAGACAGTCTTGGCAGTGAGGTGCTAAGTCATCACAGAGGTTGTGCACATACAGAGTACGATTGTGTGTGGCGCGCATCCCTCTCTGGGTGATGTCTGCGTGTGGTGTGATTCCTGGTGCACAGGGCATTGGGTATGTCTGTGGAGCCCTTAGCAATCTCAGTACACTGCATACATAGACACACACGTGTTTATCACACTCCTGGGTTGCTGATTAAGTGGCTGTTGGCTGCCTGGAGCCTCAGCTGCTGGCACTCCCCTCAGCTGTTTGCTGCTTGGTGCCTCCCCCACTCTCCATTACCTCTGGAGTCCCCGGCTGGACCTTTTTTCCTGCTGCAGGAATAATTAGGAGTGGACTGTCCTCCCCAGGGTCTCCCACTCCCGTAGGTGGTTTTTGACCAAGGCTTGCTAATTGGGGATGCGTCTTGAGCACCTTCCATACCTACTCCCCTGACTGCTAGATACCTATTAAATTCATTAGTGTGGCAGAGATGGTATGCAAGTTGTCTGGCCTGAAGCAGCCTGTGCCGAAAGGCACCCAAGTGGCCTGAAACAGCTAATGCGTATCTCCCTCCAGCTCCTCACTTATTAGAGAGGAGTGATTCATCACCTGCTTGGCAACAGGATCTGACTCATAGGTGATTTGAGATGAGAGCGTAGGCAGGAGAGTGCAAATGTACTTGGCCAAAAGGATCAGTTCTCACAGAGGCTTGCACCACCGTGTTGGAGATGGTCATGCACGTATTTCTAAGTGCTCATTAGAGGCCCTTTTAGTTCATCATCTAATGCTGACTTCTTGAGATGTCCTTTTCTAGACCTTGTTAGGATTCCGGGTAAGGTGGTGGGTGCTAGTTAGGCTAAGGGGAGGTGGGAGCAGGTTGGTTAGGCTCCCACACAACCCCTGGTGGTCAGTTCGAAGAACCACATGCACTTGTGGTGTGTTCTTGAGAAAGGGATTCAGGGTTAATGGGTATTTTGTTGAGAAGCTACATCCTAACCCAACAACTGCTGTAATTGGGGTGCATGGAGTCAGATAGCCGTTGGGAGGGGAGGCGAGAAGTCTCATGTTTTGACTGTGTTTGTTTAACAATCACCACAGAATAAAAGTGTAGAAAATGCTTGGGTGTATTAACTCTTTTTCTGTATTTAAGTTACTGAGACTAACATATACTTCTAATTAAATTCTCAACTTTTTTTGGAGTCGTCATTTTGCGTTTAAGTAGAATAATGCCTGTGGTGCATAAGGGAATAAATCAGGATTTGTGTGCACCAGTGCCTGTGTATGTGTGTGTGTGTGTGGCATTACTCAACATTCAGTATTAAAGAGTCTACGGTTTTAATGCAGTCAGTGTCAGTTTAAAAGGGGCGTATTTATAATGACATGTTATGTTTTCCCCCTGCCATGAGGACTGTCTGAAAGCTGAAGTCTATGGCAGGCCCTGGAGAGTTGTACAGTGCTCTGCAATTATAAAAAAGTGTATCAGACCAAGGCCTTATCAGGGCAGCCATGACAAAAGAAAAAGTCCAAAGGTACAATTAACTTGTCTTCTCAGTAAGTTAGTGGTCTGTCTATTTTTATGAACTATCAGCACATGGTAGGCACTTGAGCCAGTCGATGTAGGCGACTGGACCGGAGGCATGTGGTCATTCCTGAACAAGTGAGTGGCACTCAGCACATGCACGTGACTCAGTGATTACGTTAATTGTTCTTTCTGGCAAATTAACACCTCGGGGGCCTTGCACACCTGGGTACCAGTTCTGGACCAGAAAGCTACGTGACAGGAATAGGTATCAGGAGGCTCTAAATGAGATGGTTGGTAATGTGGCGAGTGTAACTTCCAGCTTCCGGAGGCAGTCATCTTACTCTGGGATTCCTGACTACCTCCCTGAACTACTAGCTTGGATAAAGACATCCTGCACTTGCTGTAGTTGGTATGGAAAGGCTCCAAGTCCTGGGGGACAGTCCTGTGCATTTGTCACTCAGTGGAACATAACTTTTTGAAAACTCAGTGCGACCTCAGTTGTTGACTAAACAAAAGTGCACGCGAGGCTTCAATGTGGCAGGCACTGCGTAGGGCTCAGGAAACCCACTGCAAGGTCTCCTGCCTGTTCTGCTGCTGCTCTCAGGATGCAACAGTAACATTCTGGAAAACTAAGTGCAAACTGGAGTGGGGGCGGGGGCGGTCATGGTTTCTGTTTGTGAACTTGCTTTAAGGGGAAAGTTGACTTGGGTTTAGCCTGATGTCAGACGGTGAGGTTTGGGGGCCTGCTGCTAGCCGCTGAGGGAAGGTGAATTGAGTGGCCAAGCTCTCTGGGCAAAGACCATGTCTAGATTTCTGCCAAGAATTCCTTTTTGTTTTGTTTTGTTTATTTTGGGGTCAGCCAAAGCTGGATCAAATAGGCATTAGAGAGCACAACTGTAAATTATGGCTTTTTTTGTTTTGTGGGTTTATTGAAATGTTATTTATCTGAGGTCACTGGAAGGAAAAGGTTTTTTTGTTTTGTCTTTTCTCTCCTTACTAAGAGGCTGTGTTAAAGCCTTTGCTGGCACAGAAGCCATCAGAGCTGAGATTCCTGCCTTCCCTATTCATTTTCATGGGTCAGGCTTAAGATGTTTCTGCACACCTGAGTTGAATGTGAGCATGAACTATAATAATGCCCACTTCATGTCTCCCAAAATCAGACTTTTCATGGGAAGCTGGCTTATGTGTGTTGTCAGAGGTTGGAATTTGTGATGAGGGTTTAGGTTTGATCCTTTCTTTGTTTCTGAGTTCCCACCATAATCTCATCTGGGTGATAGAAGGTTCTGTTAGCCACTTTCAGCCCCAAGTTGGTTAGGGTTTTTCTAAAGAGCACCTTCTTCCTTGCCTGGGATTATGGCTATCCCTTAGGCAGGCAGGCCAAGTGACATATTTAATTCAGACAAGGAGCATAATTTTCTTTTTAATCCTTTATTAATTGAACCTAATAGTATTAAGAAGTTATTAATATAGAAATAGAGGCAGGAACTCCCTGATAGTGCATCATTAGGGTCAGCAAAATCCGGTAGTATTTCCCTTCATGGCCCATGTCCTCATGTAGGTCCCAGCCTGGAGCACAGCTGGGAGTGTGAGGATGGAGAAAGGTCTGAAGACTGAGGGGATATCTGTGTCAGCCAGTGTGCAAAACTGCATGGCTTGTGTCAGAGAAGCAGCTAGTGACCTTTGAACTTGCACTTACAGTATGATACAAGAAAGACTGCTCAAAAGGAGGATGCATTTTTAGCACACCCTAGATGCTAGCCAGTGGGGAGCATGTAGTCATTTTCCACTTCTGCCCCTGCTGCTGAGGTGGCTGAGGTCTTACGGGCATCTTTCTGAAGAAAGGTTCAACTGTTCAGCGGTGGGCTGCACCTGATGTTCTGTCTTTATGCCCAAAGGATCAGTGGGGTTTAGTGCCTTTATTCTTTACTTTTGTACTTAATGGTGACTGATGGTTTTAAGAGTAGGGAATAATGACTCTGGAAGCCTCGACTACTGACCACAAACTAATACATATGTGTGTGATTTGAAGAAGTCTTCTGTCCGATTGAGTGGGGAATCTCAGCACAGTGGTCTTTCCGTTACAGATAAACTAGAATGCGGGTGAGGTTAGTAGCAGGTTTAAACTGATGATCCATAGATCCAAAGATTTGCTGGGGATGCTGGGGCAGTTCCCCGGCATTTGCACACCTCACTGGAATGAATATGCTGTAGTGGCTGGCTATTTGCAAAGTTGTACCCAGTGAACCAAGCAGCTCATTTGATTTTCTAGAGGACTTTGTGCAGGGGTTCCTTTTATGCCATTGACCTGGAAGATACTTGATAGAAGTATTCAGGGAGGTTGCTTCATAATTGCTCAAACTATTTACAATAAGATTTCTGAGAAGACACTGTTGGATGGTAAGCGGAGCTCTCTGGCACAAGGCAGCAAGTCCTGATTAGATAGTAGGGGGTCTCTACATTGCAGACTGGTGGGGAAGAGTGGGACTCTGCCTATCTCTGCTACTCCCCCAGTGTAACTTCATGGTTGCTACAGATACGAGGGAATGAATAAGCAGAATTCTTCTAGTGGTAGGGTATGTTTTGATTTCAAATCTCTGTCAAGGTCTTAGTAGGGCCAGTATATCTCAGGTAAAGGAGAAATGAAAGCATTGAAGTATCGTTACCATATTGCTCACTTAGAATCTTTATTCTCTACATTCTAG
Seq C2 exon
GTTCGGAACCTCACTTACATGGTGACCCGCAGGGAAAAGATTAAACGGTCTGTGTGCAAAGTCCAGGAACAAATTTTCACTCAGTACACTAAGCTCTTGGAGCAAGAAAAAGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025764:ENSMUST00000026865:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(35.4=21.9),PF087466=zf-RING-like=PD(61.1=12.0)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types