MmuINT0119176 @ mm9
Intron Retention
Gene
ENSMUSG00000050860 | Phospho1
Description
phosphatase, orphan 1 [Source:MGI Symbol;Acc:MGI:2447348]
Coordinates
chr11:95685814-95690089:+
Coord C1 exon
chr11:95685814-95686023
Coord A exon
chr11:95686024-95689979
Coord C2 exon
chr11:95689980-95690089
Length
3956 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGC
5' ss Score
4.37
3' ss Seq
GGATTCCCTCCCGCCCGCAGGAG
3' ss Score
9.32
Exon sequences
Seq C1 exon
CCGGGTGCTGCGGCTGCCGCAGCGCCCGCCGCGGCTCGGGCTCTGGCTCCCCGGCATTTAAAGGGGACGCGGCGGCGGCCCCGAGGATGGGGGGCAGGTGGAAGGGACGGAGCAGAAGCACATCATCCACAGTCCCTCGGGGCTGGAGGGATTCGTGAGCCGGAGCTCAGAAATCCGGGGGTGGATAAGACCGCGTACCCCCCAAATCCC
Seq A exon
GTAAGCACCCCTTGCTCCATCCTGTCCCTAAATCCCTTAAGTAGCCCCCTTCCCACTACTTCCACTCCAAACTCAGCTGGGACAGACAGCGTGACCGCTGCTGCCCCGCATGAGTCTTGGGCTCCGGGAGGACCGCGATCTAAATGTTGGGGTGGGGGCTGTGTGTAGTTTGAGTGTGTTTCATGTGCTTGGTGGTGGGGTAGTCCCAGGGGCAGAGAACTGAACCCCCTCCTTTCCCAGGTTAATGGTACCCAGTGTCCCTTCATCTCCGGGGACTGTCATAGCTCCCCGCCACCCACAAGTCCTTCCTTCTCCCCGAGCTACGCACCCCCCGCCCGCATTAGAGCGAAGCGCCCGCCAGCTGGGGGTGTGCCAGAGTGCCTGCTTTCCAGTCACCTCTAAAAATATCTCTCCTGCTACCCCACCGGCAGCTGCCATCTCCCTGCCCCTACCCAGTAAGAATCACCTCTGCTTGTCCACCCCAGGCAGGGGACCCCAGAGGTGACGCCTAGTCCCAGATTCCTCACTGGCACCGGGGCGCAGACTAGCTAGGACAGGGAACATACAGAGCCTCCGGAGTTCAGGTAATTTCTTCAAGAGGCAGTAGAGATCCCTGAGTTTTAATCCTATTTCTGATGCTGTGTGATGTAAGCTGGACCTCTCTGCACCCCCTCCCTTGCCCATTACGGGTTAATGAACAAGAAAGGAGTTTGTGAAGTTGCGAGTGTTGGGGGCAGGAATCCTAGCTTAATTGTCAGATCTAATTTCTAGTGATGGGCATACTTATTCTTGAAGCAGAGAGGGCTTGACAGTTTTTAAGTGCTCACCCCCACTCTCAGTCTGCATGTTTCTTGTGGAAAACTCCCCAAACTTTCCTATGGGCTCTACCCTCTCCCCCATTAGGAGAATTTCAAGCTTAGACTTAAGTTAGTGCACACACACACACACACACACACACACCCCTACCCCGACTTCCCACAGATCTAACCTAAAAGTATTTGTATCAAAGGAGCAGGCAGGGGCTGTGATAGGGAATCAGGGCTGCAAACATTGATCTTAGATGAGACTAGAAAAGGACTTCCCTCAGCCCCCAAAAGTTTGCCTCCTGGCTGCTCTAGCATGTGGGAGAAACTCAAAGGTCCTGTCCTGTTCTCCACGGGGACTCTGGTGGTCACACAGAATTTTTTGTTGCTTTGTTTTTCTAGACAGGGTTTCTCTGTGTAGTACCGGCTGTCCTGGAACTCACTCTGTAGACCAAGCTGACCTCTAACTTAGTTTCACCTGCCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTGCCTCTCTGCTTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTCTGCTTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTCTGCTTCTGCCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCTGTGATTAAAGGCAATGCCCTGCACTGCCCAGGACTTATCGCTTATCACCTGTCAGAAGTGAGTGACTTTTTTTTTTAATGGCAGTTGTTTTGAAACAGGAATTTTCATGTAGTTCAGGGTGGCCTCAAACTCAGATTCTCTGCCCCTATCTCCTGCATCACCAGCTGCCAACTGGTCTATGCTATGAAGCCAGAAAATAACTAGGGGTGAATGGGGCAAGGACCAAGTGTCTGTGAGGCTGTGTCAATTTTTGGGAAGAAACCCGGAATACCTGGCCTTCTGCTCTGCAGAGAAAAAGACAAGATTACCAGAGTGGAGGCGCTGGACTTTAATCCCAGTGTTTAGGAGGCAAAGGCAGGAGGATCTAAGTTCAAAGCCAGCCTAGTCTACAGAGAGAATTGCAAGCCAGCCAAGGTTAGGTAGTGAGAGCCTGTCAGCTGTCAGCATTGGGACTGGTATAATTCTTTCAAAGGAAGACAGGCAAGTAGTTAACCCCCTCCAAGAGATGAAAATTAATCTTATCAAGAGTATTTTTATTACATGCCTGGAATCTCTGAACTCAGGAGGCTGTCCAGGTTGGTCGACCCTGTCTCAAAATTAAATACAAAGATAATGGGTTAAGGGCATGCTGTATAGTATCTGCAAAGCCCTGGGGTTGGTCCTGACTGTGGGACGAGGGGAGTGAAGCAGGAAGAGAAGAGAAGGTTGTTCTGTGTGGCTGCTGGTGACCCGTTTGGTTTGTATCTTTGTATCTGACCCTTGCTTCCCTCCCTGCCTGACACTTAGTTCCTCTCTTTGTGATTGCTTTTACAATGGGTGTGGCACCCTCTGACCTATCACCTCTAACTCTTGTCTTGGGACAAAGGTTATATCAGCCGGGATTCCAATGGTGACAGTTTCCCCAATGTCCCTTGCATGCGGTTCCCTCGTCTACCATCCCTGCCCCTTTCTCTCTCACTATCTCAATAATGTTGTCTCCCAGAGCACTGCTAGTTTTTGCTAGTGAGCTTTAACCTCTTTCCAGTTACTAGCTATAGGTTCTTTGAGGGGATAGAGAACACTGAGAGCTACTTCCTGTCTCTACTGAAAAGCTTTGCTCTGAGAAAGCGAGGGTGGTCAGCTCTATAAAGAGGGTTCCAGAAGCTGTGTCCTCTTGATCCTTCCCTAGTCTACTCTGGAGGCAGTGGCTTCTGCTGCCTTGGGATAGTCAGGGAGTGTGTCACCTTGAGAGTCAAGAGTTTACGGTGCCACCCATTGCTACCACTAGAGGGCAGCAGCCACCTAGTTTTTTTTTCTTTTCTTTTTTTTTTTTTTAATCTTTGCTCTAGTATCTTTCCAATTCCAAGCTGTATCTTTCCAATTCTAAGGGGCTGGCCTCTGGTCTCATAGCCTAGGGGTGGAGGGGTAGGGGAGTAGGGAGGCACCAAAAGCTGTAAATGGTATCTGTATAGATGCTCTAATGAAGGTCCTAACCAAAAGATCACCACCCAGTCACTGAAACTCCCGTGGAAATTTCAGCTTGCCCTGTTGGTGAGATCCCTGAACAAATTAGTGCCAGAGGTGAGTCTCATATCTCCTGCAGGCCCAGGGCTCTCAGCCTCTAGACAGTAGTGAAGTGTTTATGAACCAGCTACCACCCTGCTGAAGCAATGCAGCCTGTGGGAAGTGAGTTGATTGCTCTGCTCTCTGTCTTCCTGGCTGTGATGAACCATGCATGAGATCAGGAATAAAGGTGACTGGTAAACCGTGATGCACCCCACGACTCATGTGTGGGCAAAAGGTCACGCCAGACCAGCCTCTGAGATCTGGTTTTGAAAAATCTCAGCCACTTTGAGTGAGTGACCTTTGGGTGAATCTCCTACTTAATCTGTCTACAACTCCAACAGTGTCCTCTGTAAACCCTCCGGTAAGCTAGGGAACTAGCCAAGGGTGCTGTTAGCAAGGGGCGTGGCCTCGGTGTACATGTAAGAGTTTGCTTTTGCTCGTGGGCTTGATGGAAGAAATAGTCTGATGGGATCAGTAGCGAAAGGGAAGCCAGTGGGCAGGCACTTTGTTTTGGAGACAGAATCTTTCTATGTATCCTGGCTGTCCTAGAATGTACTAAGTAGACCAGGTTGGCCTCAGACTCACAGAGATCCACTTGCCTCTGCCTCCCAAGTGCTGGGACTAAAGGCTTGCACCACCATACTCCAAATAAACAGGTATGGACTTTTTGTGGATTCCCTCCCGCCCGCAG
Seq C2 exon
GAGCTCTGGATGACAGCTGGAGACCAACAGTTTCTAAAGGTGGTGGTTAAGATAATATACTGACAATGAGCGGGTGTTTTCCAGCTGTTGGACTACGATGCCTATCTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050860-Phospho1:NM_153104:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: