RnoINT0110697 @ rn6
Intron Retention
Gene
ENSRNOG00000005569 | Phospho1
Description
phosphoethanolamine/phosphocholine phosphatase 1 [Source:RGD Symbol;Acc:1306182]
Coordinates
chr10:83636518-83640480:+
Coord C1 exon
chr10:83636518-83636732
Coord A exon
chr10:83636733-83640368
Coord C2 exon
chr10:83640369-83640480
Length
3636 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGC
5' ss Score
4.37
3' ss Seq
TGTGTTTTCCCCCTTCCCAGGAG
3' ss Score
10.38
Exon sequences
Seq C1 exon
TGGGCCCGGGTGCTGCGGCTGCCGCAGCGCCCGCCGCGGCTCGGGCTCTGGCTCCCCGGCATTTAAAGGGGACGCGGCGGCGGCCCCGGGGATGGGGGGCAGGTGGAAGGGACGGAGCAGAAGCACATCATCCACGGTCCCTCGGGGCTGGAGGGACGCGTGAGCCGGAGCTCAGAAATCCGGGGGTGGATAAGACCGCGTCCCCCCCAATTCCC
Seq A exon
GTAAGCACCCCTTGCTCCATCCTGTCCCCAAATCCCTTAACTAGCCCCCTTCCCACTACTTCCACTCCAAACTCAGCTGGGACAGACAGCGCGACCGCCGCTGCCCCGCATGAGTCCTGGGCTCCGGGAGGACCGCGATCTCAATGTTGGGGTGGGGGCCGTGTGGAGTTTGAGGGTGTTTCATGCGCTTGATGGTGGGGTAATCCCCTGGGGCAGAGAACCGAACCCTCTTCCCCCCTTTTTCCCAGGTTCATGGTGCCCAGTGTCCCTTCATCTCTGGGGACTGTCATAGCTCCCCGCCACCCACAAGTCCTTCCTTCTCCCCGAGCTGCGCACCCCCCGCCCGCATTAGAGCGAAGCGCCCGCCAGCTGGGGGTGTGCCAGAGTGCCTGCTTTCCAGTCACCTCTAAAAATATCTCTCCTGCTACCCCATCGGCAGCTGCCATCTCCCTGCCCCTACCCAGGAAGAATCACCTCTGCTTGTCCACTCCAGGCAGGAACCCCCAGAGGTGATGCCTAGTCCCAGATTCCTCTCTAGCACCAGCGCACAGACCATTACTCCCTAGGACCGGGAAAATTACAGAGCCTCCGGAGCAACGGAGAGTTCAGCTAGTTTAAAAGGCAGTAGAGACCCCTGAGTTTTAATCCTATTTCTGGTGCTGTGTGATGCCCAGGATGCAAGCTGGACCACTCTGCCATCAACACCCCTTCCCCATTAAGGGTTAATGAACAAGTAAGGAGTTTGTAAAGTTGGGACTGTTAGGGGCAGGAATCCTAGCTTAATTGTCAGATCTAATTTCTAGTGATGGACATACTTATTCTTGGGGCAAGGAAGGCTTGACATTTTTGAAGTCCTCACCCCCATTCTCAGCCTGTATGTTTCTTGTGAAAAACTCCCCAAACTTTCCTATGGGCTCTACCCTCTCCCCATTAGGAGAATTTCAAGCTTAGAGCTTCACACACACACACACACACACACACACACACACACACACACACACACACACACACGAACTCCTACCCCACCTTCCCACAGATTTTTTTTTTCTTTTTTTCGGAGCTGGGGATCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCGCTGAGCTAAATCCCCAACCCCACCTTCCCACAGATTTAACCTAAAAGTATTTGTATCAAAGGAGAGAGGGAGCAGGCAGAGGCTGTGATATAAAAAATTAGGGCCACAAACATTATCTTAGGTGGAACTAGAGAAGGACTTCCCTCGGCCCCAGAAAATTTGCCTGCTCTAGCATGTTGGAGAGTCCCATTCTCCACAAGGGACTCTGGTGGTCACACAGATTTTTATGGTGGTTGTTTTGAAGCCGGAGGAATTTTCATGTAGTTCAGGCTGGCCTCAAACTCAGATTCTCCTGCTCCCCACTCCCTACATCACCAGGCCAGACAGTTGCCACTGGCCTTTTCCAACACTATAAAGCCAGAAAATAACCAGGGATGAGTCGGGCAAGGACCAGGTGTCTGTGAGGCTGCCTCAGTTTCTGGGAAGAAACCCAGGGTGCCTGGCTTTCTGCAGAGAAAAACAGACAAGATCACCAGAGTGGTGGCTCTGGACTTTAATCCCAGCATTTAGGAGGCAAAGGCAGGAGGATCTCAGTTCAAAGCCAGCCTGGTCTACAGAGAGAGTTGCAGGCCAGCCAAGGTTAGGTAGGGAGACCCTGTCTCACAACAATGGAAAAGATTTCCATAAACACTGGTATTAGTTAAGAACATAATTGTGTCTATCTACTTCTATGAGCCATGAGAAGCTGTCAGCATTGGGACTGATACAATTCTTTCAAAGGAACACAGGCAAGTAGTTGACCCGACACCCCACCCACCCTGCCCCAAGAGATGAAAATTGATCTTGTCAAGAGTATATATTATGTGCCTGGAATCTCTGAACTCAGGAGGCTGTCCAGGTTGGGCCACCCTGCCTCAAAATTAAAAACAAAATACTGGGTTAAGGGTATGCTGTATTGTACCTCTAAAGCTCTGGGGTCAGGCATGACTGGAAGGAAGGAAGGGAGGGAGGCGGGAAGCAGAGGAAGAGAAGAGAAAGTTGGTCTGTGTGGTTGCTGGTGACCCATCTGTATCTTTGTGTCTGTCACTCGCTTCCCTCCTGGCCTGACACTTAATCCCTCTTCGAGATTGCTTTTATAATGGGTGTGGCACCCTCTGACCTTTCACCTTTAACTCTCAACTTGGGACAAAGGTTATATCAGAAGGGATTCCAACAGTGACAGTTCCCCCCAATATCCCTTGCTTGCAGTTCCCTTGCCTACCATCCCTGCCCCCTTTTCTCTCACAAGCTTGACAATGTTGGGCTTCCCAGAGCACTGCTAATTTTTTTTTTTTGTTTCTTTTTTTCGGAGCTGGGGACCGAAGCCAGGGCCTTGCGCTTCCTAGGTAAACGCTCTACCACTGAGCTAAATCCCCAACCCCGTAATTTTTGCTAGTGAGTTTTAACCTCTTTCCAATTACTAGCAATAAGTTCTTTGGGAGTGGGGGACACCAAAAGCTACTTCCTATTCCTACTGATAAGCTTTGCTGTGAGGAAGGGAGGGTGATCTGGATACCTCTCTATAAAGAGGGTTCCAGAGCCTGTGTCCTCTTGGTCCTACCCTAGTCTACTCTGGAGGCATTGGCTTTGCTGCCTTGGGATGGTCAGGGAGTGTCACCTTGAGAGTAAAGAGTTTACGGTGCCACCCATTGCTACCACTAGAGGGCAGCAGCCAGCTAGATTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTATCTCTGCTCTGGTATCTTTCCAATTCTAAGAGGTTGGCCTCTGGTCTCATAGCCTGGGGGTGGAGGGCTGAGGGAGTAGGGAGGCACTCAAAGCTGTAGGTGGTATCTGTGTAGATGCACTAATGAAGGCCCTAACCAAAAGATCATGACCCATGACCCGATCACCTAAACTCCTGCAGAGAGTTCTACCTGCCCCGTTGGTGAGAATAGATTGGTGCCAGAGTCTCCTATATCCTGAAGGGCCCAGGGCTCTCAGTCTCTAGAGGGTAGGGAAGTGTTTATGAACCAGCTGCCACCCTGCTTAAACAATACAGCCTGAAGGAAGTGAGTTAATCTCTCTGTTCTGTCTTCATGGGTGTGACGAACCATGAATGAGATCAGGAATAAAGGTGATTGGTAAACTGTGTTGCGCCCTACTACTCGTGTGTGGGCAGAAGGCCTTGCCAGACCAGCCTCTGAGAGCTGAAAAATCTCAGACACTTTGAGTGTGTGGCCTTTAGGTGAGTCCCTTACTTAATCTGTCTTCGTCTACGATAGCGCCCTCTGTAAACCCTCGGGTAGGCCAGAGCACTGGCCAAAATGCTGTTAACAAGGAACATGGACTCAGTGTACACGTGAGAACCAGGGAGGGGCTCATGGGCTTGATGGAAGAGATCCACAGTCCGGCAGGATGAATATGGACAGGAAGGCCAGTGAGCAGGCTGTCCTTGAACTCACTCCATAGACCAGGCTGGCCTCAAACTCACAGAGATCCACCTGCCTCTGCCTCTCAAGTGCTGGGACTAAAGTGCTCCAAATAAACAGGTATGGACTTTTGTGTTTTCCCCCTTCCCAG
Seq C2 exon
GAGCTCTGGATGACAACTGGAGACCAACCAAGTTTCTAAAGGTGGAACTCAGGATAATACACTGACAATGAGTGGGTGCTTTCCGGTTGTTGGATTGCGATGCCTGTCTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005569:ENSRNOT00000007352:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]