MmuINT0124045 @ mm9
Intron Retention
Gene
ENSMUSG00000053293 | Pom121
Description
nuclear pore membrane protein 121 [Source:MGI Symbol;Acc:MGI:2137624]
Coordinates
chr5:135868180-135870416:-
Coord C1 exon
chr5:135869807-135870416
Coord A exon
chr5:135868396-135869806
Coord C2 exon
chr5:135868180-135868395
Length
1411 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
3' ss Seq
CTGTCTCCTGTTCTCCACAGAGA
3' ss Score
11.58
Exon sequences
Seq C1 exon
ACCCTGGGATATTTAAGTCCGCTCCGCGGCGCGGAGCCGCGATGTCTCCGGCGGCTGCGGCGGCTGACGGAGGCGAGCGGCGGCGGCCCCCGTTGGGCGGACGGGAAGGCCGGAGCCGGGCCCGCGGCTACGGAGGACCGGCGGGTGCTGCGGCCCTCGGCCTAGCGCTGCTCGGCCTCGCGCTCTACCTGGTGCCCGCGGCGGCCGCGCTGGCCTGGCTGGCCGTGGGGGCGAGCGCGGCCTGGTGGGGCCTGAGCCGAGAACCCCGCGGCCCGAGGGCCCTGTCGTCCTTCGTGCGCGACGCGCGCCGTCACCCGCGGCCAGCTCTCACCGCTTCACCGCCTCCGGCCAAGTCACCAGTCAACGGTAGCCTCTGCGAACCCCGCAGCCCGCTGGGAGGCCCCGACCCGGCTGAGCTCTTACTCATGGGCAGCTACCTGGGCAAGCCCGGCCCGCCCGAGCCTGCCCTCCGGCAGGACCCAAGGGAGAGGCCGGGGCGCCGCCCACCCGCACGCTCCCCGCCTCCGGCCTCGGCGGTCCAGCGAGTCCACCACGTCTACCCCGCGCTCCCCACCCCGCTTTTGCGACCCTCCCGGAGGCCGCCCCACCG
Seq A exon
GTAAGCCCCGGCGATCTTCCCAGGGTGGGGTCTCTGCGGCCGCGGATTTGACGTAGGGCTCAACCTGTAAATCGGATTTAACTCACCTCCCCTTTTTCTTTTCTTTGCCTTTTCCCTTTCTTTTTATCTCTACGCCCTTCCCTCCCTTTTCCCATTACTCTCTTTTCTCTTTATTTTTTTTCTTTTTCTTTTTTTTTTTTTTTAAGAGAGGGTATTTGATGGCATAGGCTGTCTAATCTCAACCCCGTTCTTTGGCTGAGCCTGTCCTTGAACTCATCCTCCTGCCTCGTCTTCTGAGCGAGTTCACTGATAGGATTACAGGTTTGCACCAGGTTGTATGCTGTGCTGGGATAGAACCCACAGCTTCAGTCATAGCAGGCAAGCTTGCCCTCTACCTATTCCCCAGCCTTTGGGTTTTTGTTCCCCCCCCCCCCCCCCCCGGAGACAGGATCTCATGTATCTGAGCTGTCCCTTGAACTCATGAGGGTGACTTTGGATTGCTGACCCTCCTGCCTTCACCTACTAAATGCTGGGATTACCGGTGTGCTCCACTACACTCAACCCGGATTCTGGATAAAAGCATTTTTTTCTTTTTAAATTGCATATTCACAGGGAGATGAGAGGATAGCTTGCTGGAGTCCTTTTTCTCTTTCCACGTGAATTTGAGGTTGATCTTGGGTCTCCAGCTTGGCAGCAAGCTCCTTCACAAGACGTTTCACTGGCCTTGATAAGTCTGCTTAGTTGAGGTGGTGAATACCTGTTAATGTTTGGTTTTTGCTGTGTATTGGTGGTTAGTTGGGGGAAAGGAAAAAAAAAAAAACTATTCCTACACATCCCAACTGCATGTGCTTTTCTTCTGAAGTACCCATGTGGGCAAGGTTTCCAGTTTCCCTCTTAATTTGATGAAGTCTGTGGTAGAGACAGCCATTAAGCAACTGATATTTTCTGCCTTTGGATGAAATGGGAGAAATGTGCCAAAAAATGCTACGTTCTCTGCTGCTTAGAGAAATTTAAAGTCTGAGCTGTTAGTGTCATAGAGTGCTTTGTCCAGCATGCACACACCCCTAGTTTCTGCTACCAGCACTGTCTAACAGAAAAATAAGAGGTTGAAAGAAGTGTTAATGCCTCTTGTTTCTGCAGTCAGTTGAATTTGGTGTTCTTTTAAGACTGTGGTTCCAGACTGGAGAGATGACACAGTGGTTACTAGCACTGGCTGCTTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACTTGGTGGCTCATAACCATCTGTAATGGGATCCGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATATAAATAAAATAAATTAAAAAAAAACAAAAACAAAAACTGTGGTTCCATCAAGTGTCTGTCTCCTGTTCTCCACAG
Seq C2 exon
AGATTGTGGGCCTTTGTCCAGTCGGTTTGTTATAACACCCCGAAGACGATATCCCATTCAGCAAGCCCAGTATTCCTTGCTTGGGGCACTTCCAACCGTCTGCTGGAATGGTGGCCATAAGAAGGCTGTGCTGTCTCCACGGAACTCCAGGATGGTGTGCAGCCCAGTGACAGTGAGGATTGCCCCTCCAGACAGCAAGCTATTCCGCTCATCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053293-Pom121:NM_148932:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.679 A=NA C2=0.425
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTTACTCATGGGCAGCT
R:
CTGCACACCATCCTGGAGTTC
Band lengths:
358-1769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: