DreINT0117538 @ danRer10
Intron Retention
Gene
ENSDARG00000055113 | pom121
Description
POM121 transmembrane nucleoporin [Source:ZFIN;Acc:ZDB-GENE-030131-6557]
Coordinates
chr10:35239632-35242450:-
Coord C1 exon
chr10:35241867-35242450
Coord A exon
chr10:35239842-35241866
Coord C2 exon
chr10:35239632-35239841
Length
2025 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAAC
5' ss Score
4.58
3' ss Seq
TAATGTCTCAATGTAATCAGGGA
3' ss Score
3.8
Exon sequences
Seq C1 exon
TGGGATATCTTCCCTCGGCGGCGCGGTGCCGCCATGTCTCCAGAAGATAAACGGCGGCTAGTCGTTTTCTCCGCTGTGGTCTTCTCTCTCTTCATTCTTTTACTCGTTTTGAGCTACATACCAGCTTATTTGTACATACTTTTTATCTGTGTCGTGTCTTGTGTCGTTTATTTTCATAAAGCGGAGGAGTTACAGCTCTTCGAGAGACTAGGCCTCAATCCACGCCGTGGCCTGAGCGTCCCGCCGGCTCTGCTGCGCTGGTTGCCGGGCAGGACTTTTAGCGGTGTCCCGGCCGCCGGCAGAAACAAGATACGCAAAAGTGATGCTAGAACCTCTTTCGCGTCACCCAGCGATAGACACTTTGTGGGCTCGTACTATAGAAGAGAGCAGCTCAGTGAGTCGGTGTTCAGCCCTCGGGATATACTCATGGGAAGTTACCTCGCCAAGCCCGAAGAAAGCCCCTCCGCCGCGGTGAGGCCCGCCGGGGGATCGGGGTCTTTCATGCACCCCAGAGAACAGCTCCGGGAGAGACTCGCCCGACCCAATCATGCCGTTCACACCCCTAACAGAAGACTGTCATTCGG
Seq A exon
GTAAACGCTAAAAGCTGTCTTGGCACTTTCTCTAAGCTCTCAACTTTTAAAAAGAGTAATCAGATCTTCCTGTCTTACGCTGTAATGATATAAGGCATTTGGCCTCACATCTAGTTGTACTTGCATGTACGTTGTCCCACTTTTCCCTCCATGATTTGAAAATGTGGGAGTTCCTGGAGCTGGTCAGGCGCACTGCTCCTCCTACAGCGGTCTGGTCGCCCGTCACCGCACGTGTAGGCTTGCTTAAAGAGTCCCACATGGCTTCAATGTGCTTTTTTGACAGCTTAATGATCGCACTTGTGTCGTGTTTTGTCTTATGACTGCTTATACTTTGAAAGCTCCTCTTAAAGAATTGGTTTCTTTAGTGTAGTTTTGACTGTTTTAAGAGTTTGTCACTATTGTTAAAGTAGCAATGCTTAGATAATTATTAATAAATTACTATTTCATTAGTACTTTTGTGTACAAAGACTTTATTGGGTTTCAAAAACATCTAATATTCTATTCTAGACATTGTAAGTTGTTAAAGGAAATGTATTTAGTATATTATATATTAAACCTCTATAAGTCTAAAATGGATTTCAATCATTAAAACAAATGAATGTTATCTTAGAACGTTACAGTTATCTATTTTCCAACTTTTTTTTTTAGTAACTTTTTTTTTACTTTGATTTATTGAAGACATCGCCCACTGAAATGCTGTTCAGTCAGTGTAACTTTGGTTTATAGAAAAATCTAAAAATGGCAACTTTAGCACAAATTATTTGATGTCATTAAACTGCTTTTTTGTCCCAATAAATAAATTGCTAACTTTTATTTTGCAGCATAATTGTTTTAGCAATTCCTTAACATATTTTAATAGTTAAAAGCATAACAAAAATGTATGTTATGCAATATGCATTGATGTTTTTTTTAGCACAAGTGCAGGTCAGAGTATGTTGGTTTCATTTTTAACATAAATGTATTCACAGAAAGACAGTGGAACGTTATTTCACCCATGTTTTGACATTATCTTCAGTTTATTTGAAGCCTTAAAGTAGAACCGTTGGTTACATCCTTGTTTTAATGATAATTGATTTATTTTGGACAGAAAATTGCGGATTCTTTTTTTAAATATATATGTGTATATGTATTTAAATATGTAAAGTCAGGCATATATATACATAGCATGAAGGATTTTGCTTTAGAGCAATTCCAGCGCTATGGATGTGACATTTGTTGTAAACTCAACATATAAATGCACAGAAAAAGTAAATGTTAGCATTATCTTAAACATCTCTTTATATTATTTAAAACAACTAACCACAATGTTATGGGATCAGAAAAATATCAATCTGTAAACATTTTTTATATTTTAAATGTGGAAAATAAACATGCGTTATGGATGTGCCCAATGAAGTTAGCGAGTTGACAGTCTACAACATACACTGAAAAAATATTCAGAGATGATTCCTTGGATTTACTCTTAATTTTTTTTTTTACGTCAAGTGGCTCTACACAATTTATTTGGGCTGAATTTCAACAAACCAATTAAGTTGAGTTTTATTAAATTAAATTAGTTGGTTTTAATTTAACACAAATAAATTGTTTGCAACAGTTTTGCAGACATCATTTATTTCAGTGTACTTTGTAAAAAATTCTGTGAACCCAAAATAAACGATGCTAATCAAAAGGATAAAAGTTGTCTCCAGAGAATAAAAATTATTATTTTTTATTATTATTATTATTTTTTTTTTTTTTGCATTTATGAGGAAAAAGCTTAGTTATGGATGTGATCGGTGTGAAATTTGCACTTGTTTGACTTTAGTAAATCAAAAATAATTGTTTTAAAAACATTGACAGACATTTTTGAGTATTTCAACAGTACTATAAAATACAAGAATACACACAAAAAGATTTTTTAAGGGGTTCGCTATTTTGGTGACGACTTTTTTTCATGGAAAGGTTGACATTTGCATGGAATTACTCTTTAGTTAAAGTTCTTAAAAAATAAAAACAATGAACCTGTTAATGTCTCAATGTAATCAG
Seq C2 exon
GGACCCTGCAGGAAATGCGAGCCGGTTCACCATCACCCCCCAGAGACATTACCCCCTTCAACAGACAGGCACATCTCCCATTGGAGTCATGCCACCGGCAAAATGGGATGGATACCGTAAGAAGAATATCCTCACCCAACGCAATTCACCTACTGTTCACAGTCCAGTCACGGTGAAGATCGCCAGACCAGACTCCACTCGGTCATCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055113:ENSDART00000127805:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.245 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]