BtaINT0003812 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BG57]
Coordinates
chr25:34354531-34356206:-
Coord C1 exon
chr25:34355641-34356206
Coord A exon
chr25:34354747-34355640
Coord C2 exon
chr25:34354531-34354746
Length
894 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
3' ss Seq
GTATCTCCCATTCTCCACAGGGA
3' ss Score
10.35
Exon sequences
Seq C1 exon
ATGTCTCCGGCGGCTACGGCGGCTGGAGGAGGCAACCGACGGCGGCCGATAGCGAGTGTCAGGGAGGGCCGCGGCTGGGGCTGTGGCCGGCCGGCCGGGGCGGCGCTTCTCGGCCTGTCGCTGCTCGGCCTCGTGCTGTACCTGGTGCCGGCGGCGGCTGCCCTGGCCTGGCTGGCTGTGGGGGCTACTGCGGCCTGGTGGGGACTGAGCCGCGAGCCCCGAGGTTCGCGCGCGCTCTCCTCGCTCGTTTGGAACGCGCGGCGTCAGCGAACACTGCTCGCCTCGCCTCCTGCCAAATCGGCAGCAAACGGAAATCTCTTAGAGCCGCGGAGCCCGCTCGAAGGACCCGACCCCGCTGAACTGCTCCTCATGGGCAGTTACCTGGGCAAGCCCGGCCCCCCGCAGCCTGCCCCCGCCCCGGAGGCCAGGGACCTGCGGGAGAGGCCGGGCCGCCGCCCTCCTGTCCGCACCGCGTCGCCGGCTCCGTCGGCGCATCCCCAGCGTGTTCAAGTTCACCCTTCCCTTCCCACTTCTCTTCTCCGACCCTCCAGGAGGCCTTCCTACCG
Seq A exon
GTAAGATAACCCTGATCTTACCCACAGCCTCTCCTCTGTTGCCTGGCTTTGAGTTGAGGACTTGACTTTTAAATCCGATTTTCTTTTCCGTTAAGTCCAAAGTGGATTCTGTGTCGTTTTGTCCTCTTAGTCACCCTGATGCGTGTCTACTCACTCCTGTCCGCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCGCTTTAGATCACTAATTGAAATTCTGTGGTTTAGCCAAGATCAAAGAGGTGTTCCCAGGAAACATCTCTTTGATGAATAAAAGTTGATAAAGATGATCCAGAAGAATACAAAAATTTGATGAAAATACTAGTCATGAAAAGTACATTTAGTTGAGAAGATGAACATTTAGGTGTTTAAAATGTTTGACTTTGAGTATATATCACTGACATTGCATAAAAGATTGAAGCATCTTGAAAAGTTCCTCCCTGCATCCCACACTTTTCTTCCATTGTAATTTACTTGTGTGGGCAAGGTTTTCAATTTCCCTCTCCAATTGTTGGAAGTCCTAGTAGGGACAGCTGTTACGCAGCTGTCACTTTCTGCCCTTAGATGAAACGAGGGAAAGTTGCCATGAACATACTGTGTGTTCTGTGTTGCCTAAAAAGTTTAAAGCGTCTGAAAAATATCTGAACCCACATGGTTCTTCAATCATTTAAATTTTCTGATGTTTCTTCAAGTTTCTTTGGTATCTCCCATTCTCCACAG
Seq C2 exon
GGACTGTGGGACTTTATCACATCGGTTTGTAGTAACACCTCGAAGGCGCTATCCAATCCAGCAGGCCCAGTATTCCTTGCTGGGGGTGCTTCCCACAGTATGCTGGAATGGTTGTCACAAGAAGACTGTGCTGTCTGCTCGTAATTCCAGAATGGTGTGCAGCCCCGTGACAGTGAGGATTGCGCCTCCGGATAGCAAGCTGGCTCGTTCTCCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017939:ENSBTAT00000023854:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=NA C2=0.384
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGCAGCAAACGGAAATCT
R:
CAAGGAATACTGGGCCTGCTG
Band lengths:
349-1243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]