HsaINT1027567 @ hg38
Intron Retention
Gene
ENSG00000196313 | POM121
Description
POM121 transmembrane nucleoporin [Source:HGNC Symbol;Acc:HGNC:19702]
Coordinates
chr7:72925122-72926477:+
Coord C1 exon
chr7:72925122-72925765
Coord A exon
chr7:72925766-72926261
Coord C2 exon
chr7:72926262-72926477
Length
496 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
TTGTCTCGCATTCTCTGCAGGGA
3' ss Score
10.17
Exon sequences
Seq C1 exon
ATGTCTCCGGCGGCTGCGGCGGCTGGAGCAGGCGAGCGGCGGCGGCCCATAGCGAGTGTCAGGGACGGCCGGGGCCGGGGCTGCGGCGGGCCGGCCAGGGCGGTGCTCCTGGGCCTGTCGCTGGTTGGCCTCTTACTGTACCTCGTGCCGGCTGCGGCTGCACTGGCCTGGCTGACCGTGGGGGCTACCGCGGCCTGGTGGGGACTGAGCCGCGAGCCCCGAGGTTCGCGCCCCTTGTCCTCCTTCGTTCGGAAGGCGCGTCATCGGCGCCCCTTGTCCTCCTTCGTTCGGAAGGCGCGTCATCGGCGAACACTGTTCGCTTCGCCTCTGGCCAAGTCGACAGCCAACGGAAACCTCCTAGAGCCGCGGACCCTGCTCGAAGGACCTGACCCTGCGGAACTGCTACTCATGGGCAGTTACCTGGGCAAGCCCGGGCCGCCGCAGCCCGCCGCCGCTCCGGAGGGCCAGGACCTGCGGGATAGGCCTGGCCGCCGCCCACCTGCCCGCCCGGCGCCGCGCTCCCCACCGCCGCGCTCCCCACCGCCGCGCTCCCCCCCGCCCTCCCCGCCGACCCATCGCGCTCACCACGTTTACCCCTCTCTGCCCACTCCTCTTCTCCGACCCTCCAGGAGGCCTTCCCCACG
Seq A exon
GTAAGATGCGCTGATTTTGTCAGATCATCCTCTGGCTCGGCTGGCTTGAAATCGAGGACTTGACTTTTAAATCCGATTTGCTTTTTCATCAAGTCCCAAGGGGATTGTGTGTGGTTTTGCCCTCCTTAACACCTTGGTGTGTGCCAGCTGTCTCCTGGCCTCTGACTCTTGGAATGAGATGTTGTGTTGCCAAAACGATTCTCTTCTTTCCAGTTCTAAAAACTCCTCGAATTTTAGTGCAGCCTAGATGTAGTCTAGATTTAGATTTTCCCTCTCAAACTGTTGAAATCCATTGTTGAGACAGCTGTTAAGCAGCTGTCACTCTCTGGCCTTAGATGGAATAAGGGAAAGTTGCCATAAAAACACCGTGTTCTGTGTTGCTTAGAAAGAGACTTAAGTTCTTTGGAAAATGTCTGAACTGGTGGGTTTTTAACCGTTTAAAAATTTGACATTCTTTTTTGCTTTGGTTCCGTGATTTGTCTCGCATTCTCTGCAG
Seq C2 exon
GGATTGTGGGACTTTACCAAATCGGTTTGTAATAACACCTAGAAGACGCTATCCGATCCATCAGGCCCAGTATTCCTGTCTGGGGGTACTTCCCACCGTGTGCTGGAATGGTTATCACAAGAAGGCTGTGCTGTCCCCTCGCAACTCCAGGATGGTGTGTAGCCCAGTGACTGTGAGGATCGCCCCTCCTGACAGAAGATTTTCGCGTTCTGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196313:ENST00000434423:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.591 A=NA C2=0.518
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGAACTGCTACTCATGG
R:
GGAAGTACCCCCAGACAGGAA
Band lengths:
346-842
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains