MmuINT0125211 @ mm9
Intron Retention
Gene
ENSMUSG00000032827 | Ppp1r9a
Description
protein phosphatase 1, regulatory (inhibitor) subunit 9A [Source:MGI Symbol;Acc:MGI:2442401]
Coordinates
chr6:5108089-5115661:+
Coord C1 exon
chr6:5108089-5108271
Coord A exon
chr6:5108272-5109551
Coord C2 exon
chr6:5109552-5115661
Length
1280 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TACATGTGTTTCCTCTGTAGGCT
3' ss Score
10.18
Exon sequences
Seq C1 exon
ATCCTTGACGATGGACAGTCTCCCAAACACACTCAGAGTCAGAATCGGGCCGTTCATGAATGGAGTGTGCAGCAGGTGTCCCACTGGTTAATGAGCCTCAGTCTGGACCAGTACGTGCCTGAATTCAGTGCCCAGAGCATCAGTGGGGAGCAGCTCCTGCAGCTGGATGGAAATAAACTGAAG
Seq A exon
GTAAAGAATGCTTCGTCTGTGCTAGTTACTAGTTATGCATATTACTTTTAGCACCTGACATGGTTGATCTGCACATCCATGTGGTAGTTTTCGTCAGTACTTACCAGAAAAGATACTGAATAATTTTCAGTAGGGAAAAAAAAAAAAAAACCCTTCAAGAAGCCCATCACAGGTTTTGACTAGAAATAGGCTGCTGACTAAGAGAGTTAGAGGCCTTTTCCTTTACTTCACCTGGCGGCGCATGACTCCTTTATCAAAATCATTCACTGCCCATGCACTGTTCAGTTTTAATAATGCCCAGTATGAATCTTCCTTTCTTCCCTTTCTTCATTTCTCCTCCGTGCTCCACCCCCTCCTGCTCAGTACATGAAAACTGAAACATCACCAACTTTCTTCCCAGTACACCAAGCCATCCTCCCTGTCACCTCCACTGCACCTTCATTTCTGCTCATCTGGCCCTTCTCTCTTAGAGACAGAGGTGGTACCCAACTCTACCGAGAAAGGGCAAGAGGAGGGTACAGCCAGCTCTACACACCCCTCCCCACTGCTCGGCTGATGGATAGATAAGTATCTCTCGACAGTCTTTGAAAAGGTTAGCAATCAATCAATAGCTGTGAATATGAAGGCCCATTGACAACTGTCCCTGTTAGGAAGATGAATGCATCCTGCTGTGGATGCTGAAGGTCAGGAAACATTTGAAGTTCACAATAGTCTTCCTCAATTTTGAAGTGCAAGCTCATCCAGCCACTTAGTCATCATAATCAGACTTCATTTATAGGTCTGCCTTTGCGGAGACAATGGCGGAGAGATGCAGACATGGGCATCCTGGCCCCAAAGACATTGTTGGTTCTCACTGTAAATAACTACATTGGCAGAAGGGAAGCCATTTTTGTTTTGCCCACCCATCTTGGAGCCTTTTGTAGCAGCAGGTGCTCTCAGTTACCCTTTGAAACTATTGATGACTTTAGCAATACTTTAGCCGAAGGTTGGAGAAGCAGGATTGTGCCCTTTCTGTTTATTCCCTCCCTAGTCACCAATTTGGAGAGTATTTTCTTGATGACTTCTGGAGTGTATTTTGCAAAGAACTTCAGAGAACAATGCCCAGATCCTCAGGGCATACAGAATTTAGCACCTGTGGTCTGCTTTTTCCTCAGCCTTGACCTCCTGCTTCCACGTTTAACTAAGGTCATGAGATTAAACATAGTGTGGTGGTTTCCTCATCATAAACAAAGAGGTCAGCAGTTTTTCAGAGTCCTTTTGTACATGTGTTTCCTCTGTAG
Seq C2 exon
GCTCTTGGAATGACATCATCCCAGGACCGGGCACTGGTTAAAAAAAAACTGAAGGAAATGAAGATGTCTCTCGAGAAGGCTCGCAAGGCCCAGGAGAAAATGGAAAAACAAAGAGAGAAGCTGAGGAGGAAGGAACAAGAGCAAATGCAGAGGAAGTCTAAGAAGTCGGAAAAGATGACTTCCACAGCCGATCAACCGTGAGCAGTGAGGCCTCACCTCTTCCAGTAGTTGGGGAAGTTTGAGAGAAGTCCCGCCCCTTCCTGCCCCCACTCTCCTGCCGAGGATGAAGAAGAAATTGATGGGATAACACCATTGTAGGCGGTTAAAGAACTGTGTGTTGAATGCACTCTTGATTTTAACCTCCTAAAATAACCCCTCGCCATCACCTTTGGTTTATTGACAAACCAGAATTATCATTTTTGTCTTCTACTTACCAACATCCAATGTTGTGTTAAGTGTGCAGTGCCACTCGTAGGAGCAGCCTGACCCAGCCAATGAGAGCAGGACTCACTCTGGGGCTGTGAGTGGAGTACCCAGAATTCTCAGTGAGAGCCCCTGAAACTGAGGTGGTAGCTTCTGACTGTGGGTGTAGAGATGATACCTGCCTTGAGATAGGGGAGTGCCCCTCAATTCTGACTGTAGAGCAAGTCAGTTCTGTTGTGGGGATGTGGGTGCCCAGCACACAATTGCCAACTGAGGGAAAGAGGAAACAAGTGTGCTATCCACTTGCTGGGAATCAGAATGAGAGGGAAAAATAGTAGCTATTTAATTCTAGAAGGGAAAAGCCTTAAGCACACAGATGTGGGTGTACTTTGGGGCTTGGAGGACAGCATTTTCCTCCAGGTATTGTTGAACAAAGAAGAAGAAAACGTCAGAGTGTAGTGCAACCATGGATGTTGGGATCTGCTGCGTTGTTTGCCAGTGCTGCACCAAGTGTTTGACCAGCACTGACAAACTGCACAGCTCCTTCCCCAGCCACACACTGAGCCGGAAACTGACTTTGAAGGAAACCAATGTCTTCAGGTTTCTTCTCCTGGGACATTCTGGCTGGCCTTCACAATCATGAAGTTGTCACATATTTTCTACTCAGAATTTCCCAAGTGGGCTCAGTTAGTGTTTTAACAAATGTGCTTTTAAGGACTTAAACGTAGAGATACTGGTTAGAAATTTAAGATTTGAGTAACAGTCAACCACAGAACTTTTTTTCTTGTTTTTTTGTACACATAATTCTTTCCTGTGAAGGACAGCCATCTTTTACATTTTAGAGACATTTTGAATGACTTTCTAAGCCATTCTCTTCCATATTCTAGAGAGTTACAGATTTGTGGAAAACAGTACACGGGACAGACTTTTACAGTGTAAGAGCTGATGTTTCTTAAGTCCAGTATTAGGGATTCCAGTCTTTCACCACCCTGAGTTGAGTGCAGGAGACTAGGGGAGGAGGAGAACAGAAACTCTTCTGGAGACATTTCACACCCTGGGGGTTTTATTTATTTGCTTGCCTTTAGTTTTGCTCTTTTTGCTTATGTATCTAACTCTCATTACTGCATTAATTCTAAAAACCTGATATCATTTGCTTTCGGATGGACTGATTTCAGAGTAGAGCTGGAGGCCAGATGAAACCTTGGACTTCAGGGTATTTCCTTCCTTTCCCCCAGCAGGCCCTTGTGCTGCCCGCAGGCCTGTACACATCTCCTCTGCATGCACAGGTATGCAGGGCCTGCATCAGGCTCCAGAGTTAGGACAGGAATCTGATAGGATAGAGGTCGGCTGCCTGTGTGGCCTCACTTTGTATTTTAACATTGTGACTTTTCATTTTTATCGTTATTACTATTTTTGTAACATGAATTCTGACATTATCTGAACTAGAAACTTAATCCTATCCTTTCTCCCAGAGCCTGCTTCTGTTTCTGGCCCGAGCACTTCTGTAAGTTCTGGTCCTTCTGGTACAGATTCACGTCAGTCCGAAACATGATGTGGGAGTCTCATTACGCTCTGCACAAACCAGACCTGCTTCACGGTTTTCTCGAGGAGTAGGGTGCTGGGTGCTGGGTGCTGGGTGCTGGGTGCTTCTATCTCAGATGCTGATGCTTCGCCACTTACTAAGATTTTGAGAAAACAAGAGACATGCTCCTGAACTACACATTCAGTAACTCTTTCCTAATGCCAGAAGTCTAAGCAAAACTCTGGCAATTCTAATACTTGTTATTGTACGTATCAGCCATTTTTCTTTTCTTTGGGGGAAAAAAAGCTGGACTGCACTGGAAGCTTCTGTGTGTTCATTTTCGAGAGTGAAAACAGAAGGGTGATGATTTTAAGTTGTGTTTACACTTTGATGATAGTTGAAAATGAATGTATATATTGGAAATGTCTGTAAGTCTGCCCTGCCTGTAACTTATGACCTCTTATATTGCGTTTCTTAAATACAGTGTTCTCACTGTGACTTTATTAACACTCCATGCTTGGATCAGCGTACATCTGGCAGTTACAAATCAAACTAATGTTCCTTACATCATTAGTTTATAGTTTAGTCATTGTAATCTTTAAGTTAAATTATTGCAATCTTAAACCAAAATGAGTTCTTTTAACGTTGCTACTTAAAACTAGTAAAATCGTAAAGGGCTCTTGATTGCACTGTTCAGCAAAGGATAAGAGATGGACTGGTTGGTCCGGTGTGGAAACAAAGTGAAGGACCTCAGATCTTGTGAGCGTTTTGACTTCTTGTTAGCTCCTTTATTGGCTGTAGTGCATGATAATAATTGAGTTTCCAACGTCTTGCACAATGCTTTCTTTAATGCTGTGGTTTTCAGGGTTTATACAACTTAAAGAGAATTGTTGCTTCATGGACTTTAAGGATTTCGGACAGTTTTTAAGCTATCAACAAATGAACAGAAGGGGTTGTCTGCATATTGTGAACTGTACTCTAGTGAAGACTAGTGGGTCCCACCAGAAACCAAAAGTGTTTGGGGTACAATATATGTTCGGGTGTCAGGGTACATGGTGAGGCCCTGCCATAGGTAGAGAGCATTGTAGGAGTAGATTCTGGGTCAGGGTTCCACTAAAGAACTGTGCACTGGATGTCTGTGATTAAGATCATCTCCTTTAAGGCAACTTATCCTTATGTGATCACGTCTTTCTCCTCCCCAGCATCAGGAGGGTACTGTTAGAGCAGAAACCCTGCTCTATCTACTTTAGCACTCGATCGAAGCCTGCCATTACTATCGTGACAGCAAAGTCCCTCTGAAACCATCTGCCATCCTTCTGCTGGGGTTGGGATGGACTTCCTGCTCCCCACCTCGTGTAGACTTTTAAAATACCGCAGTAGTTTCTGATCACACTATGAAAGGAGCTAATGCCAAACTCAGTTTGCAAGAGGCACAACATGTGACTACCTACTTTATGTTCTTTTATTTCAGGAAACAAAGTAGCAGAGGAGAGAGTACTCCCACTACTGCTCATGCCCAATAGTGTTCACCCTGAGATCTTAAATACCTTAGGCCTAAGCTTCAAGAATGTCCACAGGTCAGATTTAGCATCTGGGCCTCTATGGCTTGTGCTGATGATGAAGAATTCTCTTTTGGGATCTTTGCTTGATAGGATTAATTTGTACCTTAAAATTATATAAGAAGAAAATGGTTGCATTTATACAGCTATTCTAAGTTGTTTATAAACGTGAGAGGTTAGAAAATTTTGAGGAGGACCATTAACATTTAACAAGGGTATTTAAGATGATTCTGGAAGATGGAGGGGAAATGATTCTAAAAGAAACTTCTGTACATTGGATGCATATCACACTGTCATACACTGGGATCGTTAAGAATTACCAAATTCTATGTGAGTAACTTAAGCCTCTTCCCACATAGCTGGTGATAAGAAACATCTCACTTTGGGGAGCAGGCATTAGGAGGGTTTATGTCACTTGGCTTCAACGCTAAGACCCTACTGTTACCTGGATGGAAGAGTAATTAAGAAAGGATGGTCCTAGTTTTCACATGTTTTCTTACTTGCTTTGAGTCAGGGCTCCCCATGTCTAGTTCTAAAGCAGAGCTTGTGGAGGTGAGGTCAAACTTAAAGCATCTATGCTTCCTTCCAAAACTGTTCTCATTGTGAAAGGACAAAGGGAGGGGACAGTCTCCAGACAGCATTTACAGGAAGTCTGTTTAGTCTCTGGTCAGTCCTGAAAGTCAGACTGAGTGTACTGGCCAGTTTTGTTTGCTTTTGTCTTGAATAGTTAGAGTCCCATGAAATGTAGCCCTGATTCAAAACATTGGGAGTGGCAGGAATATCACCAAAGAAAACACATATTAATACCTTGAAGATAACATGGAAGAAGCTAGAGTGAGTAGTTAGAGGGAAAGGGGAAGCCTGTACAGTAAACTGCCCTCTGGAGATAGTGCGAGCTCCTCACACAAACACACCCACTTGCACTTGCGCGCGCGCGCGCGCACGCGCGCACACACACACACACACACACACACACACACACACACACACACACACGCACACTGCCTCCTGGAAGGTTGGCTCCCTACGACTCTGGTCTGTAAGCACCTGGGTCTGGATCCTCCGAGTAGGGGGCAGAAGAAGGTCCATGCTTCCCTGCCGCTGCCCAACCCCACCCCACCCCACCCCCCGACCGTTAGGGATCCAGCGATGTGCAAGACAGTGTACAAGCAGTAAGAGAAGAAGCCACAAATTCTCAGTTCTGTGCATGCCACTTGTGTAGGTGTCAGAGCTGTGTGTGTGAATATATCCCCACCTGACACACACACATATATACCTTAAGCACGTGGCACAAAAATATACTCACCGTGGACTGCAGTGATGTCAGTTAGGACCCTGGGCTGTAATAGTGGCAACACCGCCACTTTTTATGTTGTGTATACATTGAATGGCTCATAGATTTTTAAGAGATTTTTTTTTTTTTAATGTAAGTATCCTACTAAATGCACTTATGCTTCTAAATGTTTATATATTTTGGTAAAATTGATTTACTAGATCTTTAGTATTGTATTTTAGTAAGGTAAATTTTCCTCAGATATTTGATTAATGCTTTGATGTCAAGATTGCACATTTTTTAGTTAGAACTCAGAAGCTATTATGCAGCTTGGGGCATTTTCAACTGCAGGATGCCCGCAGTTTTCTTGACTAAATTGCACTGTGTGTTCTCGTGTATCAGCTCCCACCTCAGTAGCCATGATGCTTCTGTCACTAACTGCTGGCTCTCTGGTGGCAGTATTCTGTCGTGTGACCACTATGTACTTCCTAAGCCATCCGCTTGTAATGGCATTTTGGTTGCCACCAAAAATAACACAAAGGGGCCTGAGTATACGCTGTTGCAAGCTGTATACTTCATTTCCTTCGGCTGGTTTATGCACGCACACAAGTTTCTTGTTAAAGATTGAAGCACTCAGCCATGAAATAACAATTGGCCAGAAATACCCTAAATTGCCTTTACCAAAAGAAAAAAAAAAAAAAAAAAAAAAGCAGGAAGCGATGCCCAGGCCAGATAGCTCTTTCCAGCAGCATCAGGTTCAATCGGTGAATAACAAGCAGCGCTCAGCGTACATACGTGGGCTCTCCTCAGGATTATTTAATGTCATAACTACTGCTTTTGTATTTTTTAATGATGTTTTGATGAAACCACTTCTAAGTCTGCTATAGATTACTGACAAGGCCAGACAGCTGAAAACGACAGGGGAAGGAAGTTCCGTTCTACTGTAAGACTTGACTTATGTTCGCCCTTCCTTATATACTGCTAGAAAGGAAAGTGCTTTGTAAAGCATTAAAGTCTGGAAAGTATGCACAGCACAGGACCTGAACTTTTTAATTTGTACGTTTTGCTGTCTGGTCATTTGCATGGGAGAAACAGCAGTGCCACACCTAATTTGTTCTCTGGCGCTTCGTTAGTGTGTGCTGTTTCCAATGGCATTCTTTACTTTTCAGTTTTCAGAGGCATTCAAAGCAAACTCTGCTGTCAGTGGACCATTGTTTTCCGACCATCTAAAAAATACCTGTGATTAAACTTAACTTGTTAGTGTAAATAAATCTCTTGCCAATGAGTATTATTGTTGTTAGATAATGAATGCAATAAAGGAAATACAGAGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032827-Ppp1r9a:NM_181595:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=NA C2=0.985
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PU(66.2=70.5)
A:
NA
C2:
PF0764712=SAM_2=PD(30.8=29.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAATCGGGCCGTTCATGAA
R:
CCTCACTGCTCACGGTTGATC
Band lengths:
354-1634
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: