HsaINT0130733 @ hg19
Intron Retention
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:14946]
Coordinates
chr7:94917848-94925727:+
Coord C1 exon
chr7:94917848-94918030
Coord A exon
chr7:94918031-94919402
Coord C2 exon
chr7:94919403-94925727
Length
1372 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TGTGTGTGTTTCTTTCTTAGGCT
3' ss Score
11.53
Exon sequences
Seq C1 exon
ATCCTTGATGATGGACAGTCTCCCAAACACAGTCAGTGTCAGAATCGGGCCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTAATGAGCCTAAATCTGGAGCAGTATGTATCTGAATTCAGTGCCCAAAACATCACTGGAGAACAGCTCCTGCAGTTGGATGGAAATAAACTTAAG
Seq A exon
GTAAAGAATTATATGTCTGTCTTAGGTTACCAGGTATAATTTGTATTACTCATATCACCTAAAATGTTTTCATTAGGTAAGAGCATTCTGCATATCTGAGAGGTAATTCTCATCAATATTCAGCAGAAAGGATGTTGAATTCTTTCTGAGTAGTAAATGAAGTCTCAGAAAGTCCATCAGGGGTTCCAAATCAAATGGTAGGCTGCTGATTAGGAGAGTGAGGGACCCACTCCATTGCTTCCACCTGGCAACACATGGTCCATATATTAACTCTCCTTACATCTGATGTAGTATGAGTTTTAATAATGGCCACTGTGGACTTTTTCATCACATTAGAATTAAGACCCAGATCCACGAGTCTTCTTTTCCTTGTTCATTTCTCCTTCACCTCCACTCTTCCTTACACACCACTCCCAAACTGGGATGATGTTCTCCCCAGAAGTTTTTTCCCCAAATATGTACACACATCTTCCCTCCCCTCCATGGCACTTTCATTTCCACTTGTCCAGTCCATCTCTCTTAGAGACCAAGGTGGCATCCATCCCTTTGGGAAAGGGAAAAAGGTGCTTACAGCCAACTCCATGTACCCCCAAGCCCCACCCCCGCCTCAGCCCCCTGCTGGGCTGACGGGCAGACGAGTATCTCTTGACAATCTTGAAAAGGTTAGAGATCAATCAATAGCTTGTGAATATGAAGGCCTCATTGACAAGGCTGTCCCTGTTGGGGAGATAGATAGATGCATCCTGCTGTTGATTCTGAAGGTCACGAAACATTTAAAGTACATAAGCAACTCCCCTTATTCTGAATTCTAAGTTCATCGAGCAACCTCCTCATTATAATCAACTTCCTTTATAGGTCTGCCTACAGGGAAAGAATGGCTAGTCATGCTGACACGAGCATTCTGGCCCCAAAGACATTTTTGGTTCTCATTGTAATGAAAACATTGGCAGAAAGGAAGCCATTTCAATTCTTCTTGCCCTTCTTGGAGCCCTCTGTGACAGCAGGTGCTCACTCCTATGCTTTGAAAATATTGATGAGTTTAGCAATACCTTTACCCGTAAATGCCTACAGCCCAAAGGTTGGAGAAGTAGAATTGTGCCCTTTTTCCATTCATTCACCCATTAATTACTCATTTGGAAAGCATTTAATTAATGAGCTTTAGGGTATACTTTGCAAGGGACTTCAAAGAACAAAAGAAAAAATAAAGGGTAGCCCCCAGTGTGTTGGTTTTTAGCAAATGTAACTAGTTCTTCCTCTGTTCTTACCTCTTCAATGTTTGAATTAGTTTACGAACTTGGATATATGGTATGTTAACACCATCAGAGGGCTCATTGGTTTTCAAATTCAGTTTGTGTGTGTGTTTCTTTCTTAG
Seq C2 exon
GCTCTTGGAATGACAGCATCCCAGGACCGAGCAGTGGTCAAAAAGAAACTCAAGGAAATGAAGATGTCTCTAGAGAAGGCTCGGAAGGCCCAAGAGAAAATGGAAAAACAAAGAGAAAAGCTAAGGAGAAAGGAGCAAGAGCAAATGCAGAGGAAGTCCAAAAAGACAGAAAAGATGACGTCAACTACAGCCGAGGGTGCTGGTGAGCAGTAACACATACCCTCTTACAGATGATGGAGATGCTCCAAGAGAAGTCCCCACCTCTTCCTGCCCTGCTCTCCTCCAGAGGATGAAAAAGAAACTAAATGATAAGGGTAATGCGGCTCTAGGCCGGCTGAGGAACTGTGTGTTGAATAACTGCATTTTCTGCAATAGAATGCACTCTTAATTTTAACTACTAAAATAATCCCAAGCCACCTTTGGTTCATTAACAAACCAGAGATTTCATTTAAGTAGCTGTGTTTTGCTCTTCTCTAACTTACCAACATCTTGTGTTGTGTTGGGTGTGTTTTGTCACTTGGAGAACTAGTGTGACCCCACCCAAGAGCATGACACACCCTGGTGTTGTTAATGGAGCGCCGTGAATTTTCAGTGTGGGATCCTGAAATGGCAATTGCACATGTCTGCATGGCAGAGAGCACCCTGCCATGAGATCTGAGACCAGTACTTAACTTCTAGGACTGCAACACCTACTCCAATGTGTGGGAAAGATTTGCTCTTAATTCTCAGTCTGGACAGTGAGACCACCCCGCTGTGGAAACATGGGTGCTCTGCTCTGTAGTTACCTACTAAGGGAAAAGGCAAGCAAGTCATTCTGCTTGCTAGGCATCAAAAAGAAAGAAAATAAATTATAGCTATTTGTTAACCACTGAAAAAAGCAAAAGCCTTAAGAATGTGGATGTGGGTATTACCTTGGGGTTCTGAGGGTAATATTTATCCTCTAGATACGGCTGAACAAGAAAGAAAAAAATCAGACATTAATGCAGCCATGGGATATTGGGATCTGTTGACCTTGCTACTGCTGTGTGTTCAGCATTTCAGCAACACTGGCAAACACAACACAGTTCCTCTTCCCCCTACCTAACCCAAGAAATTGAACAGGAAATTGATTTTTAAGGAAACCACCATTTTCAGGTTTCCTCTCCTGGGGAACATTCTGGCTGGTCTTCAGCCTGCCTATGTCACAATCAGGAACTCATCACATATTTTCTACTCAAGATTTCCCAGGTGGGCTCAGTTAGTATTTTAACAAATGTACTTTTAAGAAAAATAGAAATACCAGTTAGAGGAAACTGTCAGTTAACATTTTAGAGAGATTTTGAATGGTTTTTCCGAACCATTCCTTTCCATACTTCAAAGATTCTCAATTTTACAGAAAAAGTTTGTTTAAGGCAGTGCATAGGTATACTTTAGTAGTGGAGGAACTTATACTAATTTTAAGCCAGCATTAAGGATTTCCATGTTTCACCAAACTAAGTCAAGTGCAGGAGACTGGGGCAGAAGAAGGAGAAAATAAACTCGTTTTGAGAAATTTCATGTGATGAGGGTTTTTTGTTTTTTATGCTCATGTATCTGGTTCTCTTTGCTGCGTTGACTCTAAAAATGAGGTTATCCACTTTCCAAAGGACAAGTTTCAGAATAAGACTTGAGGCCACATGAATTCTTGGACAGTATTTTACTTCTTTTACTTTATGGGAATCTCTGCTCTGTTCCCAGCATCTCGTATCTTCCACTAGAAGTATTCCATATTTAGAGCCTCGGCAAGGCTTTTGAGTGTAACAGATTAAGGGAACTCCCTTGTAGCCCCATCTTGTATTTTAATAACAGTGTGATTTTTTTTTATCTGAAAATCTGAATTCAGAAATTATCTAAACTGGACATTTTTAATTCTGTTTTACCCCCAAGGCCTGTTTTCTTTTCATTGCCAGAGTATTGTCGGTTATGCGTCAGCTCTTTTGTCATTAGGTACAGACCCTTCATTCAATCCTCAGAAACGTTGACATGAAGTAACATTGTGTTTTACAGTTATCAAAGTCACCATTATGTTTTTCTGTCTGTCTTCATTAGGGGTATGATAATGAAACTGCCGTATTGGATACTCTATTAATGTCTTGAGATGTCTGGTGCTTTGTTATTTTTTCACATCATGAGAAATAAGAAGCCACTATTAATGAGTGATACAATTTGGCAAAACTTTTCAAATACTAAAACACTAAATTAGTAAAAATCTGGTAATATTAGTGCTTGCTATTGTAAATTTTTGCCATTTTTGCTTATCTTTGGGAAAAAAGTGACCTGGATCACACTGGAAGTTTCACTGTATTCAAGAGTAGAAATAGAAGGATGATTATCTTAAGTTATGTTTACACTTTGGTAATATTTGAAAATGGATGTATATACTGGAAATGTCTGTAAGTGTCTTGTTTTTGCACCTAATTTATGATCTATTATATTGCATTTTCTTAAATATCTTAGAAGTATTTTTCTTTATAACTTTGTATATTGAATGTTTAGATAAATGTCCAACTGACAATGTTATAAATCAAATTCTTATTCCTAAAATCATTTAGTATTATAAGTATTTTGATTTTTTAAGTTAAATTATAGTAATTTTAGGCCGAAGTGAGTTATTTTAACATTACCACTTAAAACGGATGAAATTGTAAAAGTCATTTGGTTTGATTGCCCCACAAAGCATAAGATGTAAACTGATTAAGGGTATGAAAGCAAAGTGAAAGACCTCAGATCTTGTGCACATTTTGTTTTCCTATTATTTCTTTTATTGACTGTAGTGCATGATACCTAATCAAGGCTCCAATGTCTTGCACAATTCCTACTTTAATGCTAGTGGTTTTCAGTGTCCTTACAATTTAACACAGAATTGTTATTTCATCAACCTTAAAAACTGCAGTTTTTATTATCAGAAAATGAACAAAAAGGGAATATCTGGTTGCTATGAACTGATTCCCTAAAGGAGAGCTCAGTATGATTCTAACAATAGCCAAAAGTGTTTTGGGGTATAGGTTATGCTTTGTTGGGAGGGAATGTGTGGTGAGGAGGCCAAGCTGCAGACAGAAAGCATTGTATGAGCTGTATCTGGGTCAGGGTTTCCCATTAAAGGATGTTAGTTTTATAACAGATTACTTTGTTTAAGACCATCTCCCTTCAAGTAACTCACAGTTTATGTAATACTAATCTCATTCTTTTTTTACCTGAATCAGGAATTTTCTGCAGAATGTTAAGTTAGGGAAGAAACCTCATTTCATCCATTCTAACACTCCTGATGAAGTCCCCCTTTAGTTTCATGACAATAAAGCTGTTCTGTGGCTATCATCCTTTAGCTGGGATTGACAATTGATTTCACACCCTCAACATCACAAGCTTTTTTTAACCCACAGCAGTTCATGATTGCAGTATGATAGGTACTAAAGCCAAACTCAGCTTTCAACTGGCACAAAATGGGACTGTCACCTTTTGCTCCATTGTTGTTGGAAACAAAGTGGCAAGAGGGAAAATGAGGAACCAGATTTACCTTTGCCACTATCTGTGACCCTGTAATCATCACTAGCCTGAAATCTTAAAATATCCCAGTCCCAAGCTACAAAAATGGTCACAGGTGGTTTGATCTAGCACCTCGGCCGTTAGAGTTTGTGCTGAAGACAAATTTGTCTGGGTTCATTGTGCACCAGAATTAGCATGTGCTTGAAAATTGCATTTTATAAAAGGGAAATGAAAATTTGCATTTATATAGATACTCTGATTCATGTTTAAGTGTTAAAGGTTATGCAGACTAAACTTCAAGAGGAGATCCAGTGTTTAACAATAGTGTTCTAGAGGATTCTAAAGGAAGCTGCCCCAGCAGCCCTGAGAGAACCATCTATACTTTGGATATGTTGTAGCCCCATCATTACACTGAGATATTTCCATTTGAGTAACTAAAGGTACTCCTGACAGAGCTGGAGATGAGGGGCATTTTGGTGGGCAGTGGTCACTAGGGTTCACGTCACCTACTTAATGCAAAGACCTTAGTGGTCTCAGAATGAAAAGGTAAAATGGAAGAGAAAAGCACAGTCCTTTCCTGTCTTTTCAAATTTACTTTTTATTAAGGATGTACCTGTGCACTATTCTAAAGCTAAGCATTTAAGGATAAAGTCCAGAAATAAAATGTCCATATTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTCTGTCATCTGTCACCCAGACTGGACTGCAGTGGTGCCATCATGTCTTACTGCAGCCTCAAACTCCTGGGCTCAAGTGGTCCTCCTGCTTCAGCTTCCCAAGTAGCTGGGACTACAGGCATGTGCCACCACCCCCAGCCAAAACATCCATATTTTCTATTAGAATGGTTTACATTATGATGGGGGATGGGGAGCTGGGGGAGGGCTGTACATTCCCAAAAGAAAGTAGTGTTATAGGAAATCCAAATGCGCTTCAGTGATTCACTCCTGAAAAGCAGCCTGGGTATGTTGGCAGATTTTGTTTGCATTTGTCTTGCGTATTTAAAGTCTCAGGAAATCTAGTCTTGGTCCAAAACACTGGAGAAAAAAATAACACCAGACAAAACACATTTGAGTAACTTGAAGTAGCAGCATAGAATAGGCCCAACTAAGAAGTTGGAGGGGCAAAGAGAAAGCCGACAGAATCAGCTTCTCCTGGAAAGTGAAAGCATCAAGTTCTATTTATGGTAGACAGAGGGTCCTTATTTGCTTGTCCGTGGTGTCTATGTGGGCCTATTGAGGGAATGGTAGTTACTTGAAGGTTCACATATGTAAGCGTGTGGACCCAGCACAGTCTGTGACCTGATTCCAGATCCTCAAGAGTGGAGAAGGAAAGAAATATGATGATTTCCTATGCTTGACCCTAACCCAACCCCAAAACTGCTAGGGATTCAACAGTGAGTAAGATGTATGCAATAAGAGAACAGATAACTTCTCAACAATGTGCATGCCGTTTGTGTAGATGTTCAGAACTACATATGTGTGAATATCACTCCCACCTTACACACGCACACACACTGCAATCACATGGCATTAAAAAATATATTGTGTATGGAACTTGGCGAGGTCAGTCAGGACCTGGAGCTGTAATCATAGCCTTATTGCCACTTCTTGCGTTGTGTATACATTGAATGGCTCATAGATTTTAAGAGATTTTTTTATTGTAAGTATTTCTACTAAATGCACTTATCCTTCTATATGTTTATATATTTTGGTAAAATTGATTTATCAGATACTTGGTATTTTAGTAAGAAAATTTCCTCAAATATTTGGCTAATGCTTTGATGTCAAGATTGCATATTGCTGAGTTGGAGCTCAGAAGAAATGTATGCAGCTAAAAATTGCACTGTGTGTTCTTGTGAATTTGCTCACAATTCTAAAATGACATAATTGGTGGCTGTGATGCTTACAGTCACTGCCTACTGGCTCTCTTATGATGAATGTTGCCATCATATGATCATTTATTTACTTTTTGTGCAAGCAATGGCATTTTGGTTGTTGCCAAAAACAACACAAGTGGTTGGGAGTGTATGTTGTTGGAAGGTGTACACTTCTGTTTCTTTCAGCTGTATTATTTATACACCCAGGTTTTCTGTTAAGGATGTAATCATTCATTCAAGAAAGAACAATTGGCAAGAAATAATTAAATTACCTTAAAAAGAATTAAGAGGCACTCCAGCCAGATAACACCTCCCAACAACATGAAATTTAGTTAGTGCTTAGTGAAATTCCTTAAATATATATGTATATGTTTTCTTCAACATTATTTAATATAACTACTGCTTTTATATTTTTTAATGGTGTTGCAACCACTTGTACACCTGCTACACCTTACTGACAAAACTGGGCAGCTGAAAATAAAAGAGAATAAATTCTATTCCACTGTAAGAAGTTGATTTCTTTTCAGCTTTCTTTGTATATCAGTAAAGAACACGAATTGTTTGAAAATAATTTTAAGTCTGATAAGTATGGATAGCATGTTACCTAAGCTTTTAATTTGTACATTTTGATGTCTGATCATTTGCATGGAAGAGACAATAGTGCCACGTCTGAATTGTTCTCTTGTGCTTGGTTAATATGTACTTCTCTAGATTGTTCAAAAAGTTTCAAATGACATTCCTTACTCTTTGGTTTTCAGAGGCATTCAAGCAAAATATCACAGTGGTCTTTTGTTTTCTGACCAATCTAACAATACCTGTGATTAAATTTAATTTGTTAGTGTAAATAAATTTCTTGCCAATGAGTATTATTGTTGTTAGACAACGAATGCAATAAAAAGAAATACTGAGGTCTGTTGAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528-PPP1R9A:NM_001166160:19
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=NA C2=0.963
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PU(66.2=70.5)
A:
NA
C2:
PF0764712=SAM_2=PD(30.8=28.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCAGTGTCAGAATCGGGC
R:
TCGGCTGTAGTTGACGTCATC
Band lengths:
348-1720
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)