DreINT0139635 @ danRer10
Intron Retention
Gene
ENSDARG00000074575 | si:ch211-269i23.2
Description
si:ch211-269i23.2 [Source:ZFIN;Acc:ZDB-GENE-090312-99]
Coordinates
chr1:30267777-30271239:-
Coord C1 exon
chr1:30271051-30271239
Coord A exon
chr1:30268959-30271050
Coord C2 exon
chr1:30267777-30268958
Length
2092 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
ACTGAATCACTGTATTTCAGGAA
3' ss Score
6.26
Exon sequences
Seq C1 exon
ACTCTTGATGATGTCTCCACTCCAGCAGCAAAGCAATACATGTGGCAGAACCGCCCTCTTTCAGAGTGGACCAATCAGCAAGTTTGCCACTGGTTGATGGGCATGAACATGGAACAGTATATAGCCGAGTTTACAGCTAAAGGCGTGGATGGCCAGCATCTCTTGAGCATGGACAGCAGTAAACTTAAG
Seq A exon
GTTAGTATTTCTGAGAATTTTATAGAGCCATTTAAGGCCATATTCAAGTCATGGTCACTGGGTTTTACAAACAATAGTTCTGCATAGGTCCTAAAATCTTTAACCAACTCAAAGAATATACAGCTTCATTCAGACTTATGTACTTTCTTAGTCATAATTTCCATCAGACAATCATATAATCACTGTATGTCTTATCCATCTTCAATCAAATCATATCTTCCCATCACTCCACATTATGTTTATAATGACCCATTATATCTGCTGTTCTAATTGGAGGTTGCTGTGTGTCACATGATTTTTTCTTGGTCCTTGTCCAAAACAGAATCCATGTGCTTCCCACTTGTTAAGGGTCCAAAAGTAATTGGAATTATAATAATAATCCTAAATCAAACTTTCACTTATTAATACTTGGTTTAATACTGCAAAAATCTTTTTGCAGTCAATTACAGCCAGAAGTCTGGAACGCTTAGACATCACCAGATGCTGGGTTTCATTCCTGGTGGTGCTCTGCCAGGCCTCAGTTCCTGCTTGTTTTTAGGGCATTTTCTCCTCAGTTTTGTCTTCAGCAAGTGACATGCATGCACACTCGGATTCAGGTCTTGTGATTGACTTGGACATTGCATAACAGTCCACTTCTTTCCATTCCAAAACTCTTTTGTTGCTTTTGCAATGTGCTTTCGGTCATTCTCCATCTGCACTGTGAAGCACTGTCCAATGAGTTTTGAAGCATTTGACTTAATATGAGCAGAAAATGTTACCTGAAACACTTCAGAATTTATCCTGCTGCTTTTGTCAGCAGTCGCATGATCAATTAATACAACACAACCAGATCCATTGACAGCCATACATGCCCACACTGTCACTACTACTACCATGCTTCACTACTTAGGATCATGAGCAGTTCTTATCCTTCTCCATACTCTTCTCTTCCTATCACTCTGGTACAAGTTGATCTTAGTCTCATCTGTCCATAGGATGTTGTTTCTCCTCTGTGAAGACTTTTGTAGAACTCTAATCTGGCCTTTTTGTTTTTGAGGCTCACCAATGGTTTGCATCTTGTGGTGAACCCTCTGTATTCACTCTGGTGTTGTCTTCTCTTGATTATTGACTCAGACATACATGCACCTACCTCCTGCAGAGTGTTCTTGATCTGGCCAACTGTTGTGAAGGGTGTTTTCTTCATCAGGAAAATAGTTCTTTGGCCATCCACCACAGTTGTTTTTCTTGGTTGTACGGGTCTTTTGGTGTTGCAGAACTCACTAGTGTGTTATTTATTTTTTTTAAATATTCCAAACAGTTGTTTTGTCCACGCCTAATGTTTTTGCCATCTCTCTGATGAGTTTTGTATATTCAGCCTATTGATGGCTTGCTTGACTGATAGTGACAGCCCTTTGGATCTATGCGACTTAACGGTAACAGATTCCAAATCCAAATAGCACTTGAAATTAACATTTGGAACCTCTAGACCTTTTATCTGCTCATTGTAATTGGAATAATGAGGGAATAACAAACACCTGGCCATGGAACAGCTTAGAAGCCAATTGTCCCATTACTTTTGGGCCCCTAACAAGTGGGAGGCACAAATTCACCTGATTTGGATTTAAATACCCTCAAATTAAAGCTGACAGTCTGCCATTAAAAAAAAAGTCTGAAATGAAGATAGAGATGGAATGAAAATCAGATCCAGAAGGCAAATGTTACCCCTCAGTGGAAAACTTAATTTCCAAACCACGTGTATTGTAAAGTAGTCAGTTTTCCACTTCAGTATGTAAAGAAACAGCTCTGTTTCTAGTCATATCACATTGAATTATAAATAACCTTTTAAAATGGTGAAGTTTGTCATTTTTAATTGTTAGCCTTACTGTACCTGTCTGTCTCTCTCTGTTAAACGGTTGACAAAAGCCCAGCATGAAATTCCAATATTCTCCCTCAGTAGACATGTGAGAATGTCAAATATGTGGTGTGCAAATTAGCAATGTACAATTATTGAAGGGCATTTTTTCTTCTTCAGTATTTTTAAAAGTTACTGTGTAAACGGTCCTAGAGAGTGTGTTGTGACAAAATAGTATTAAACTGAATCACTGTATTTCAG
Seq C2 exon
GAACTTGGTGTTTCTAGCCAAAGAGATCGTGCTACCATCAAGAGGAGACTAAAGGACATGAAGAAAGCTCAGGAAAAACTTGAAAAACAGCAGGTAAAAAAAGAAAAAGAAAGAGGAAGAGAAAAGGACGCCAATAATAAAAGCAGACAACCAACAAACTTTGAATCAGCCTGCTGAGGACATAACAAACATTGACAAAACCATCTTTCACAGGTGATTTGAGGACTGGTGAAAAATTATTCACTCTTTAAGTCTGACTGAATACATATTTTTATTGTAAATGTGTCTTGCCTCTAACATGTTTTTGACACAAACCAACATTTAAAGAATCAATTCCTGTCTGCCACATTGACATTAACATGCATAATGGCACTTAGAGAATGGGAACTTATAACCTACTTATCCAAAAGGATATTTTTTTATTGCCTTGAGCTGATTTGTTTAAGTGATATGACTGACTGATGCAGTTTGTGGTACTAAAAGTGATTTAATGCTGTCCACCAGAGGGCGCTGATGTAAATATGTGGCACGGTAATGTTGTTGAGATGGTCAAACTAGTTCTTCAGCATTAAGACAAATGCCAAATTACAATGCCAAGCTGCTAGTGCACAATCTGCACTTTAGCCAAACGTCAACAAATAATCCCAGTGTGAATCTCTCAATGTGATGCGCACAGGGTTAATACTCCTCATTAGGTAACTTGTGCTCCCTCTTCTAGTGTACACTTTTGAAGGGATAGTTCACACACAAAAATTAAAACTTCATTTTCAAGTAGTTCTAAACTTTTATGAATTTCTGTCTACTGTTGAACACATATTAAATATTTTCCAGAATGCTAAAAAAGCAGCCATTGACCTCCATAATAGGAAGTAAAAATACTATGGAAGTCAATGGCAGTTTCCCGCATTATATCTTTTATTGTGTTCAAAAAAAGAAACTCAGACAGGTTTAGAACAAATCAGTTAATGAGGATTTTGATTTTTAGTTGTACTGTCCCTTTAAGTGAGCACTTCACCATACAAGTCAGGTGTCTTTTTTTTAAGAGTCATCTTTTTTTAATGTTTATTGTACATAACTCTTAGTGATGTAAATTTTACTGTAGAGAGGAGAGCAATTCATTGTCTTCTATGTCACAGCTGATGATTTTACATGTGTATTAATAAATAAATATTTTACAACTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074575:ENSDART00000132466:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.352 A=NA C2=0.982
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PU(66.2=67.2),PF095975=IGR=PU(60.8=48.4)
A:
NA
C2:
PF0764712=SAM_2=PD(30.8=33.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]