MmuINT0127449 @ mm10
Intron Retention
Gene
ENSMUSG00000024124 | Prss30
Description
protease, serine 30 [Source:MGI Symbol;Acc:MGI:1353645]
Coordinates
chr17:23974220-23975230:-
Coord C1 exon
chr17:23975129-23975230
Coord A exon
chr17:23974247-23975128
Coord C2 exon
chr17:23974220-23974246
Length
882 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
AACCTTCTCTTGTTTTTTAGGGG
3' ss Score
10.75
Exon sequences
Seq C1 exon
AGATATTTCAAGGACTCTAACCCCACTGCGTTGTGGACCGGAGAGGAGCCATGGAGTCCCGGGCAAGGTGCATCTTTCTTCTTTTGCTGCAGATCCTGACAA
Seq A exon
GTAAGGAGTGTTGATTCCTTCCAACTCCTTCCTCCCATGATGGCTTCCACACCCTTCCTCCATCTTCCTGCTTCCTTATCATCCTTAGCCGCTCTCCCTAGACAACCTGGAGGGGGCTGAGAGTAGGAGGCCAAACCTCATGTGTCCACTGATCCTCCAAGAAAGACAGGGGAAGGGGAAAAGAGAAGATGGCTGTTGTCTTATCATGAGTCAGGTCTCATGATAAGAACTTCATGAATGAGATGTTCAGCCAGGCTCCTTCTCTTGTTTTGAATTTGTTGTTGTTTTTTAAATTCTATTTGGAGAATTTTCTGTGTATACAATCTATTTTGATTATATCCACAGCCTGCCCCCCCCCCACCTCCCCTGAGACCTAGCACTTCCAACATCGTCTTCATCTCTCCTTTCTCCCCCTCTTCTTCTTTTGCTGCAACTCTGAGTCCAGCCACTGCCGTCCACACGCCCATGGGGGTGGACCACCCAGTGGAGCATGGGCAACCCACCGGTGGTCACATCCCCAAAAAGTTACTCTCAGTCACAACTGCAATGGCTCCTCAGTGAGGGGTGGGCCTTGGGATCCACTCCCCATCCACAGTGGATTGTTGACGGCCTGACCTTGCGCAGGTCTTATGCAGGCTTCTTCTATAACGGCTGTGAGTAGCTACATGGATGCACCCACCACGCCGTGTCCAGAAGGCAGCATTTCCTTCTGCATGCATTCTCTCTGCCTCCTCTTCCGTGATGTCCTGGAGCTTGGGAGGGTGTTGATGTGGCTGTGGATTGTCCCATTTAAGGCTGAGCCCGTGGTTGCTTATTCTTAGTGGTTTGGTCACTTGTAAGTATCTGTCAGAGCCCATTGAGAAACCTTCTCTTGTTTTTTAG
Seq C2 exon
GGGCACGTGGAGATATATTGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024124:ENSMUST00000024936:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types