RnoINT0118705 @ rn6
Intron Retention
Gene
ENSRNOG00000033266 | Prss30
Description
protease, serine, 30 [Source:RGD Symbol;Acc:735142]
Coordinates
chr10:13350917-13352371:-
Coord C1 exon
chr10:13351891-13352371
Coord A exon
chr10:13350944-13351890
Coord C2 exon
chr10:13350917-13350943
Length
947 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AACCTTCTCTTGTATTTCAGGGG
3' ss Score
9.94
Exon sequences
Seq C1 exon
GCTCCTAGTTCTTAAATAGGGTTGGCCAAGAGAGGCCCGGGAGCCACAGTATTGATAAGGGAACCTGGGCTTAGGTGTTCCTCTCTCAGCTCTGAGTTCGGTGTGGGGCCAGGGAGGGCAGATTTTCCTTGGTAGAGCCCTGGGTCTCCTAGACAGAGTGGGTAAAGCAACGGGGTCCCCACCTTCCTGAAGAATGGGTGAGACTTCCCTATGTTAACCTCACAGGCGGACTGACAGACAGCTCCTGTCACCGCTGGCTCCTGACCTTTACCAAACCAAGTCCCTGGAACTGCAGAACAGGAGGCTGACTGGGCGGGTCCTGTCGGGTAATTGGGTTCCAGTTTGATTGCCTCTAAACACTGAAATGCAACCCTCCCCTAGATGCTTCAGGGACTCTGACCCCACTGTGCCGTGGACCAGAGAGGAGCCATGGAGTCCTGGGCAAGGTGCATTTTTCTTCTCTTGCTGCAGATCCTGACAG
Seq A exon
GTGAGGAGTGTTGAATCTTCATTCCTCCCCAACTCCTTCCCCCCATGATGGCCTCCACACCCTCCCTCCATCTTCCTGCTTCCTTATGACCCTCAGCCACTCTCTCTAGAGAACTAGGAGGAGGCTGAGAGTAGGAGACCAAACCCCTGGTGTCCATCGATTCTCTGAGAAAGACAAGAGGGGAGAGGGGCAAAGAGAAGCCGGTTGTTCTTTCTGAGTGGGGCACCATTCCTGAGTCAGGCCTCATGGGGACAATAACTCTGTGAATGAAATGCTCCCCCCAGGCTCCTTCTCTTGTTTTTGTTTTTAAATTCTATGAGAATTTCATGTGCATAGAATCTATTTTGATCCTATCCATTGCCTGCCCCCTCTCTCCACCTCCCCTGGGACTGCCCAACACGTAACTCTCCCAACATCATCGTCATCTCCCCTTTCTCTCCCTCTTCTTCTTTTGCTGCAACTCAGAGTCCAGCCACTGCTGTCCACCCGCACATGGGTGTGGACCACCCAGTGGAGTGTGGGCAACCCACCCGTGGTCACACCCCAAAGAAAAATTACCCTCAGTTACCCACCAGCCATCAGCTGCAATAACTCCTCTGCTAGGGTGGGTCTGAGGAGTCACTGCCCATCCGCCATGGAGCGAACATTGACTCCCTGACCTTGCACAGGTCTTATGCCGGCTTCTACAGCAGCTATGAGTGGTTACATGGATGCGCCCACCACGTCATGTCTGGAAGACAGCGTTTCACAGCACGCCTCCCCATCCTCCGTCGTCCATTCTCTCTGCCCCCTCTTCTGTGATGCTCTGGAGCTTGGGAGGGTGTTGACGTAGATACAGGTTGTCCCATGTAGGGCTGAGCATTCGTTTGCTTGCTCTTAGTGTTTCGGCCAGTTGTGAGTGTCTGCATTAACCACAGCCCATTGAGAAACCTTCTCTTGTATTTCAG
Seq C2 exon
GGGGACGTGGAGATATATTGCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033266:ENSRNOT00000034340:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTGGGTAAAGCAACGGG
R:
TGCAATATATCTCCACGTCCCC
Band lengths:
350-1297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]