MmuINT0134172 @ mm10
Intron Retention
Gene
ENSMUSG00000041354 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:MGI Symbol;Acc:MGI:107483]
Coordinates
chr17:33932040-33932371:+
Coord C1 exon
chr17:33932040-33932218
Coord A exon
chr17:33932219-33932320
Coord C2 exon
chr17:33932321-33932371
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
GACCCTCTCCTCATCCCCAGGCT
3' ss Score
9.82
Exon sequences
Seq C1 exon
GCTCCCTTGCCTCCACCTCGCTCCTCCCGACGGCTCCGCGCTGGCACTCTGGAGGCCCTGGTCAGACACCTCTTGGATGCCAGGACAGCAGGGGCTGACATGATGTTCACTCCGGCCTTGCTGGCCACCCACCGGGCCTTCACCTCCACTCCTGCCCTGTTTGGGCTTGTGGCTGACAG
Seq A exon
GTCAGGGGCCAAGGGTTAGGAGGCTCCTGGATTCCCTTTGAGCACCCCCAGCACCAGCGGGGGCTGGAAAAGCCACAAGGTAGACCCTCTCCTCATCCCCAG
Seq C2 exon
GCTGGAAGCCCTTGAATCTCATCCTCCCGGTGAGCTAGAGAGGACCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041354:ENSMUST00000047503:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(50.0=81.7)
A:
NA
C2:
PF0061815=RasGEF_N=FE(17.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTTGCCTCCACCTCG
R:
TGTGGTCCTCTCTAGCTCACC
Band lengths:
226-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types