RnoINT0126469 @ rn6
Intron Retention
Gene
ENSRNOG00000000474 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:RGD Symbol;Acc:1302985]
Coordinates
chr20:5463864-5464198:-
Coord C1 exon
chr20:5464020-5464198
Coord A exon
chr20:5463915-5464019
Coord C2 exon
chr20:5463864-5463914
Length
105 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
GACTCTCTCCTCCTTCCCAGGCT
3' ss Score
8.91
Exon sequences
Seq C1 exon
GCCCCCTTGCCTCCGCCTCGCTCCTCCCGAAGGCTCCGTGCTGGTACTCTGGAGGCCCTGGTCAGACACCTCTTGGATGCCAGGACATCAGGGGCTGACATGACGTTCACTCCAGCCTTGCTGGCCACCCACCGGGCCTTCACCTCCACTCCTGCCCTGTTTGGGCTTGTGGCTGACAG
Seq A exon
GTCAGGAGCCAAGGGTGAGGAGGCTCCTGGATTCCCTCTGAGTAACTCTCAGCACCCGGGTGGGGGCTGAAAAAGCTGCAAGGTAGACTCTCTCCTCCTTCCCAG
Seq C2 exon
GCTGGAAGCCCTCGAATCGCATCCTCCGGGCGAGCTAGAGAGGACCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000474:ENSRNOT00000000554:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.331 A=NA C2=0.400
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(50.0=81.7)
A:
NA
C2:
PF0061815=RasGEF_N=FE(17.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCGCTCCTCCCGAAG
R:
CCTGTGGTCCTCTCTAGCTCG
Band lengths:
216-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]