MmuINT0134193 @ mm9
Intron Retention
Gene
ENSMUSG00000040146 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:MGI Symbol;Acc:MGI:1918996]
Coordinates
chr9:21785128-21785949:-
Coord C1 exon
chr9:21785734-21785949
Coord A exon
chr9:21785232-21785733
Coord C2 exon
chr9:21785128-21785231
Length
502 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
AGCTCCCCTCTCACCCCTAGCGG
3' ss Score
7.44
Exon sequences
Seq C1 exon
GAGCTCTTCTTGCGCGTGAGGTCCTGCGAATGCCTGGGTTCCATGTGGTCTCAGCGCGACCGGCCAGGAGCTGCAGGCATCTCTCCCACAGTGCGTGCCACCGTAGCCCAGTTCAATACGGTGACCGGCTGCGTGCTGGGCTCGGTGCTCGCTGCGCCCGGCCTGGCGGCCTCGCAGAGGGCACAGCGCATCGAAAAATGGATTCGCATCGCCCAG
Seq A exon
GTATGCATCAGAGATGAGGCTCGGGTGGGGTTCAGGCATTGTAGGACACAGGATTGGAGAAGCTGAGGATCGGAGACTGGAAGTGAGTGTGGTGAAAGACTAGTATTGCGGTGGGAGAGTGGAGAAAGAAGGGAATAGGGGTAGATGGAAGAAGCCAGGTTCAGCTGAGAGGTTTGGGGTTGGGAGTCGGGGGGCGGGGGGCAGAGAGGCTCCTGAAAGGCAAGGGAAATATCTGTTTGCATGTTTAGTTATGAGACCTGGAATCTGACCTGGTATCAGAAAATCCAACCACAGCCTGGGTATAGAGGCACATACCTGTAATCACAGCACTTGGGAGGTGGAGGCAGGAGGATGGAGAGTTAGAGATCAGCCTTGCCTGTGTAACCAGACCTTGTCTTTAAAACCAAAACAAACCACGAAGTTACTATAACAAAGGAGCTGTGATTGGGAGATGACAGCAGTGGAGTGTGGCTGCTGACCAGAGCTCCCCTCTCACCCCTAG
Seq C2 exon
CGGTGCAGGGAACTACGAAATTTCTCTTCATTGCGAGCGATCCTGTCCGCCCTGCAATCTAACCCCATCTACAGACTCAAGCGCAGCTGGGGAGCTGTGAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040146-Rgl3:NM_023622:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(34.1=100)
A:
NA
C2:
PF0061714=RasGEF=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCTTCTTGCGCGTGAG
R:
CGGCTCACAGCTCCCCAG
Band lengths:
320-822
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: