RnoINT0126486 @ rn6
Intron Retention
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22992668-22993952:-
Coord C1 exon
chr8:22993737-22993952
Coord A exon
chr8:22992772-22993736
Coord C2 exon
chr8:22992668-22992771
Length
965 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TCCTTCCCTCTTAATCCTAGCGG
3' ss Score
6.6
Exon sequences
Seq C1 exon
GAGCTCTTCCTGCGAGTGCGGTCCTGCGAGTGCCTGGGTTCCATGTGGTCTCAGCGCGACCGGCCGGGAGCTGCCGGCATCTCTCCCACAGTGCGCGCCACCGTGGCCCAGTTCAATGCGGTGACCGGCTGTGTGCTGGGCTCGGTGCTCGCTGCGCCCGGCCTGGCGGCCTCGCAGAGGGCACAACGCATTGAAAAATGGATTCGCATCGCCCAG
Seq A exon
GTGTGCGTCGGGGCTCGGGTGGGGTCCAGCAGCAAATCTTGGGTGAGACTGAGAGAGTAACCTAGCATTATAGGACACAAGATTGGTGGGGCTGAGGATCAGAGACCGGAAGTGGGTGTGCCTGAAAAAATAGGGGTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGAAATCACATGGTGGCTCACAACCATCTGTAGTGAGATCTGATGCCCTCTTCTGGTCTGAAGACAGCTACAATGTACTTACAAATAAATAAATCTTAAAAAAATTAAAAAAAAAAAAGAGCACTGACTGCTCTTCCAGAGGTCATGAGTTCAATTCCCAGCAACCACATGGTGGCCCACAACCATCTGTAAAGAGATCCGATGCCCTCTTCTGGTGTGTCTGAGACAGCTACAGTGTACTTATATATAATAAATGAATAAATCTTTAAAAAAAAAAGAGCACTAACTGCTTTTCCAGAGGTCTTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTGCAGTGTACCTGTATAGGGTTGGAGAAAGAGAGAAGGGAGTAGCCAAGTTCAGCTAAGAGGTCGGGGTGGGGTGGGGTGGGGTGGGGGAGCTCCCGAAAATCAAAGGCAACATCGCGGTTTATGTGTTTAGTTACTTGACAGGTGAGACCTGGAGTCTGACCTGGTATCAGAAATCCCAACCGCGAGCTGGGTGTAGTGACACATACCTGTCAATCACAGCCCTGGGGAGGTGGAGGCAGGAGGATGGAGAGTTTGAGATCAACCTCTGATGTGTAACTACCAAGTCACTGTATCAAAGCAGCTGTGAGTGGGAGAGCGCAGTGGAGTGAGGCTGTTGACCAGAGCGCCTCCTTCCCTCTTAATCCTAG
Seq C2 exon
CGGTGCCGGGAACTACGAAATTTCTCTTCCCTACGAGCGATCCTGTCCGCCCTGCAGTCTAACCCTATCTACAGGCTCAAGCGCAGCTGGGGAGCTGTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027:ENSRNOT00000017493:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(35.3=100)
A:
NA
C2:
PF0061714=RasGEF=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCTTCCTGCGAGTGC
R:
CTGCTCACAGCTCCCCAG
Band lengths:
320-1285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]