GgaINT0035656 @ galGal3
Intron Retention
Gene
ENSGALG00000004728 | Q5ZIY0_CHICK
Description
NA
Coordinates
chr8:8029293-8033471:+
Coord C1 exon
chr8:8029293-8029508
Coord A exon
chr8:8029509-8033367
Coord C2 exon
chr8:8033368-8033471
Length
3859 bp
Sequences
Splice sites
5' ss Seq
CACGTAAAG
5' ss Score
-2.14
3' ss Seq
TCTAACCACTCCTTTTGCAGGAA
3' ss Score
10.21
Exon sequences
Seq C1 exon
AAGCTCTTCAAGAAAGTTGTGCCCCACCACTGTTTGGGATGCATCTGGTCTCGAAGGGATAAGAAAGAAAACAAGCACCTGGCACCTACCATCAGAGCCACCATCTCTCAGTTCAATGCGGTTACCAAATGCGTTGTCAGCACTATCCTGAAGAGCAAAGAACTCAAAACCCAGCAGAGGGCCAAGATCATTGAGAAGTGGATTCATATCGCACAC
Seq A exon
GTAAAGCATCTATTCTAGATTGTTTGATGTTCCTCATGCAGGTGCTTTGGAGCGAGGGAGAGGAAGAAGGGGTTGTGTGCATTGACCTCGGGCCAATCTTAGCTCTCATTCCTTCTAGATTTGACCAGCTTTCTTGCTAATAGCAGATAGATACTGCCACCTTTTCCCTTCTTCCTTTTCCCATGTGGAAATTGGGCTGGTGTTTGTCTCTTTGCAGGGAGGGGAATGCTAATTAATAAATGAGGCAGATAGTGTGCCTTGCAGATGGGGAGTGCTACATACTTGATAATGTAACATCGATGGTAAGATAAATTCAATCAGTTGAGTTCCCTGGTAAGAAAGTACTGCTCATATCAGTGACAGAAATGACACGGTGGTTGATCCCCCCCTGCACTCCCTTAATCAGGCAGTGCAGTGACAGGACAAGGGCTAACAGTTTTAAACTAGAACAAAAAATAATGGTAGGAGGAAATGATTTCTGGTAGGGGTGGTGAGGCACTGGCACAGGCTGCCAAGAGAAGCTGTGGTTGCTCCATCCCTGGAAGCATCCAAGACCAGGTTGGACTGGGCTTTGAGAACCTGGAGGTGTCTCTGTCCATGGCAGGGCATTGGAACTGCGTGAGCTTTAAGCTCTTTTCCAACCCAAACCACTCTGTGATTCCATTATATCACCAAATGTTAGAAGGAAATGAAATAGAAATGGAAAACTGGCAGTGGTGTAGGCAGCAGGCAGTCAGAATGAGCTTTGCACTTCATTTGCCTTGGCTGTTAATATTCAGTCAGTGAGCATCAAGCTCCCTCTCCTGCATCTGCAAATGATGTAAGAGGTGAAGCCAGGTATGGTGGAAGACAGCATAACTGTTGTGTTTTCATACACATACATTTAAATATGCATGTACGTATATATGAAGGTTAAGCACTAGATTTTAAGTGCAGAAAAAAACTAACTTCTAAGTAGTTGTAGCCTTTTTAACATGAGAAAAAAGTGAAATTATTATGCTCTTTTGTTCTGAAAATGTCTTGAGGCTAAACAGTCATTTGCTTACTGAATTATTCCATGTTCACACTGGATCTACAAACCAGCTGGGTTTGGGATGGGGCAGGTGGAAAGGGCAAGTAGTGGTACGATGTGGTACTGGTCTCATCATCTGACTTTCCTACTTTTTCATTGTCTTATATTTATTTCTCTCTAAGACATTCTTCCTTTTTGCCTCAGTTCCTTTGTCTTTTAAGAGATTGTGTGTTTCTTAATCTTGGCATGATAGAGTTTTGCATACCTTCTTTGCATAACTCTAGTTATCTTATTTCTTAGATTTTATCAGCTATATTTTACTGTGAGCTTTTTAATAAGTGCCTTTCAGAGCACTGGGCAGCTGGCACCTAAACTAGGTCTCCTTTTTGAAAAGAACTTTGTAGCAGTTTAATATGGGTATCTGTTGACTTTGTTTGAAGAATCACATGGATTCTTTCAAAGCTCTACAAAACAAGCAGTCATAAAAGGCTCAAGCCAAACAGAGACCTTCCAACCTTGACAATGCACGTCTGTGCTTCCCGAGGCAGCATTGTTAGTACTGGCACCTAAGCTCCAGCAACTGCATGGTTCAGGAAACTGGTATGGGGAAGTTCTTTCACCTCTACTTTGGCACTTAGGTCAACGCATTATCTGCTGCCCACTTTATAGCCCACGTGAATGGGATAGGAAGTTTGATTCTTATTTCCTGTGTGCAGATCTCCAGCTTGCAGAAGCTATCAGTTAATGGGGCCTTCATGGGGCAAGCTGGGCTGCAGTCTGGGCAAGCAAGCATGGAGCTGCTTCTTGCTCATCACAGGGCAGCAGAAAGGGCCAGGAAAGCCAGGCCAGGCACTCTAATACTTGTTCTGTGGATGAAGAACTTGGTTCTCCACCTCAGTTAATCCAGTACTTCTCCCTTTACTTAGATCATGCACTTAATTAAATGCTCCAGTCTTTGCTAGGCACATGAAAATGCATGTGCACGGTCTGCAGAATAATTGCACATGTAGAACAGCTACTTGCATATAGAGTCAGCTGCCCACTTCTGAGGAAAGTTGCTTGCTTTGTGCATGCAAATGAGTGCTTGGAATAGTTAGATGCCTGAATTAGAAAATAATCCACTCATTAAAGTGCAGTTATTCACTGACAGCTAACTCTGTAACTTAGCAGCACGGAGTTCTGCATTTCTTATCCGTTCATGACTTCTGGATCCGGTTTCTTAGATTACAAGGAAAGCTGAATAAACTGCAGCCCTCTCCGCTCCACCTCCATCTGAGGCTCCTGAGCAGGAGCAGCCAATTTTATTCACACGGTATTTTCTTTAAAAATAAGAAGTCAAAATGAAATAATTAGTATCCTGTTATGCTCAATTTAAAACAAAGTCCAAGTTCTTTCAGAGCACTCTGCAGGATCCTTTCTGGTTTTCCCCTTGAGAAGGACACAGCGTGAAATGAAGTAGTTCAAAGCGGTCTAAAAAATCCTTATATGCAAATGGGAGTTTGCTAAAGTTTAGGCAGCAGTCAGTTAGAACACTGAGAACATGAAATCCAATCTTGAATTCCCAATGAGCTTTTAATCATATGACATGGATTTTAAGTCAAGATGGTTCCAAACTGGAGCTTCCAGTCCAAACTTCTGTCATACTTGAGAAAGAGAAATGTTAAGAATTTGCCCCTAAATCCGTATTCTCCACAGCCTGAATTTCAAGCTGAACATGAAGAAGGAAGGGTTTCGTTCTCAGAGGTGTCAGTCTCTGAAGAGCTGTGCCTTCTTTGGCTGCAAACCATGCAAGATGAGCTTTCAGGTCTTGTGTGTCCTACCACATGATCTTGAACTTGGTCTTCACAAGTTCTTCTTAGCCATATCTTAGTCTAAGTTGCACAAATACATATATATATATATGTACATGCATATGGGGTGGTGACACACTGGAACAGGTTGCCCAAGGAAGTTGTGGATGCCCCATCCCTGGAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGCTGGTTGGCGACCCTGCACATAGCAGGGGGTTGGAACTCAATGATCATTGTGGTCCTTTTCAACCCAGGCCATTCTATGACTCTGTATATGTATACATACATACATATCTATATATCTATGTTAGGTAAATGTATGGGAGCATATGTCCTTCCCTTAGTTGTTCCGTCTAATACAATTGCCTCACTGGGCATCTGTGCTCTTCTTTGGCAGACTAAGTTTTCCAGTATCCTTTTCCATAGGAGATTTTGCCACAGCGGAGCTCCATAGGAAATGCATATGAAGCAAATCTCTTTGTCAGGATTTGATCCCAACTCTGGAGAAACTTAGAAGGTTTACTCTTTAACAGGGTGCACGTACTTGAATAACTGGTTATTCCAATCACGTCTTTAGTTTTAATTGACACTAAGATGACTGAGGGTTTACATTTTAAATACCACATACAAAGAGGTGAAGCCTGATTTTTTTTTCCCCTAAAGGGCATAAGGGGTCGGTAACCATAAAGGGCTTTTTAAGAAGCATAAGAGTTGTGCTTTTTAGCCTGACTTCGTGAGCTCAGTTCAACTTATTTTTTTCCAGGACTGGACTCTGTAGTGCTGCAGCATCTTCACAAATACATGAAAGTGAGGAAAACAAGATATAAGTGCCAAAGCCCATAAAGCATTCGGTGTTTGAAGGGGGGATGATATTTTTGATGCTGGATATTTGTACAGCTGCCTGCTTAGCAGTGAGAATATGTAGCAAGCATGACACCGGTCAAACAGAAGAGCACTAACCTAGCCATAATGCTGACCTTTAATGCTCCTGTATTTCTAACCACTCCTTTTGCAG
Seq C2 exon
GAATGTAGGATCCTGAAGAATTTTTCCTCCTTGAGAGCCATCGTTTCAGCACTGCAGTCCAACTCCATCTATCGGCTAAAGAAGACCTGGGCAGCTGTTCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004728:ENSGALT00000007530:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(32.1=100)
A:
NA
C2:
PF0061714=RasGEF=FE(15.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]