RnoINT0126456 @ rn6
Intron Retention
Gene
ENSRNOG00000002347 | Rgl1
Description
ral guanine nucleotide dissociation stimulator,-like 1 [Source:RGD Symbol;Acc:1308947]
Coordinates
chr13:69940629-69944404:-
Coord C1 exon
chr13:69944189-69944404
Coord A exon
chr13:69940733-69944188
Coord C2 exon
chr13:69940629-69940732
Length
3456 bp
Sequences
Splice sites
5' ss Seq
CACGTAATT
5' ss Score
4.34
3' ss Seq
CTTCATCCCTCCCCACACAGGAA
3' ss Score
9.45
Exon sequences
Seq C1 exon
CAACTGTTCAAGAAGGTCGTACCGCACCACTGCCTGGGCTGCGTTTGGTCTCGGCGGGATAGAAAGGAAAACAAGCATTTGGCCCCTACCATCCGGGCCACCATCTCTCAGTTCAACGCCCTCACCAAGTGTGTGGTCAGCACCATCCTGGGGAGCAAGGACCTCAAAACCCAGCAGCGAGCCAGAGTCATCGAGAAGTGGATCAACATTGCTCAC
Seq A exon
GTAATTATCTTTTAAAAGACTTGTCTTTGTGTTTGGTAGACGGCCTTCCTGACATCAGACATTATGTTCTGTTGAGGCTCAGAATCTAGCCTATCGGAGCCGCCACTCCCACCCCACATGACTTGTATCTAACACTGTGTAGAGAAAGGCACAGTCTCTAACCCTCCTTCTCTGTTTTGTGAGTTCCTAGTGTGTTCAAGTTTATCCTTACGAAATATTAGATAGACCACACCTGATGTAGCTGTACAGGTACCACACTCACTGGAATGATCTCACCCTATGCAGGACAGGGGTCAGCAATGGAAGTGGTGTAGGAAGTAGAGGAGGGAAAGCTATCTCTGAGTAGTGTGATCAAAAAAGATAGTAGTGAGGCTGGAGAGGTGGCTCAGCAGTTTAGAACACAGCTATTCTTCCGGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTATATATAATAAACAAATCTTAAAAAAAAAAAAAGAAGCAAAAATGGATATCCCTTCATAAAAGAGAATTTTAGGTTCTTGAAGATGAACGTTTTCTTCTGGGGAAGAAGAAGGTACAGTGAAGGGTTGTGGAGTCAGTTAATGTATAAATACCCATTAGTCTATGTTCTGGGTCACAGCTAACCCTCAACCCGGACTCATTTAGCTTAATGTCACATTAGATGTATTTTCCCACTACTCCTTGTTTTTAGGACACAACACCCAAGTCTGTCATGTTTCTTTTATTGTTCTTGACCAAAGAGCAAAGCCACAATAGCCCAGATAATTTGCCTTGTTATGAGTCTTTAAGATGGCTATTAATTACCCCATACATGCTCTGAACATACACACACACACACACACACACACACACACACACACACACAAGCAAGAGACAAAGCATACACATTGTAAAGAACACACACACATACACACACTCACACACAGACACTCTCATACATACACACACACACTCTCATACATACACACACACATACACATACATACACAGGAGACCAAGTATGCACATTGTAAAGAATACACACACACACATACACACACTCACAGACATACACACACTCACACACATACACACACACACACACACACACACACACACACACACACACACACACAAAACCAAGAGACAAAGCAAGTACATTGTAAAGAACTCAGTTACTTTTCCACAAAAATAACTGCAAAAAGTTTCAAGGGACATGGTACTGGCAGACGGTGTCTCTTTCTTCTTATAGAAATGTAAGAAAATATTTTTTGTCGCAACACTTACGTCTCAAAAGCAAATGGTCTTTATGCCTCAAATTCACTGAACTACTTAGCCTGAACACCCCATCCCTGTGGGGGCATAGTGACTCAAATCCTGACTTTCAGTTGAAGTTAAATATAGATTGTGTGTTTACCTGATAAGGAGACTCTAATAACTCCAAGTGTATTCCACGTCTCATAGCATGTGCACAAAGCCAAGAGTCCTTAGCCTTGGTGTTACAATGGGTTTCCTCCAGTGTTGAATATGTTATGTCTCTTGAAATTATGGAGGATAACTTCATAAAACACTGAAATTTGCAGGTAGTTCCCTGCCAAGATTTATTTTATTCTTCTTTCATTAGTCATAGGCGATTTTTGTTAAAAAATTTTTTGAAAATTGGTATTAATTTTACATGTAGGAACTGTTTCTGACCTGATATGGGTGTGTGCCCCGGCCTGGCCTCTGCTGCCATTTTGGATTTGCACTGCATCTTTTGGACTACGCCTCCTTTTCTAGAAACAGGACTGGATGCTTCACGTGTTCCCAAAAACCCTTAGCCTCAGCCTGTTACTGAATAATGTGTTCCATATGTTTATTACGATGGACATGATATATTGGGGCCTGGGTGTCTTTATTTATTACAAGTTTCCTGGTTTTTAGAACATAATTTTGGGATGCTGAACCTTTGTTGAACCATGCTGTCAGAGAGAAGTTTCCAGACAGCAGCAGGGCTACACCCCCTCTCTCCCCCGTCTCGCTTTCCTTTTCCCTTCCTCCCTCTCTCCCCCCTTCCCTCTCCTCCCTTCCTTTCTCATATTCCTCCCTGCCATTGCCTCCCTTTCTTCCCTCTCTCCTCCTTTCTGTCTTTTCTCTCTTTCTCCCTCTTCGTATATCTCACCTTCCTCCCTCTCACTCCCCCCCTCCTTCTCTGTTTTCTTTTTAAATAAATGGGACATCAGGACATTATAAAAGACTGGGGATGAATTTTATGAAGTACATTGACATTTACTCTGAAGAAAACATTTGAGGTTTGGTTAGTGTGCAAAATTTTGTCACGACAAATTGGAGAGTTCTGTTTTTACTTCATAGTCCAGATCAGCATTACTTAGTAAAATGATTCTTGAAGCAAGTTACATTTATGCCCACCCACCCTGGCACTGCTTGCCTGACGTGTTCTGCACAAAGGCAAACATGTGCTCACTCAGTGTCGTCCGGTGTGACCTCGGTCCAGTGCATCCTGCGTGCCTGTGTGCAAAGCGTCTCCTCTGACCTAGATGTTCACCGGATGTGGCCACACCCCCAGGCCAGCCAACCATGGACTGGGGTCCTTTCCCTGTTTTACTGGCCCTACTGTCCATAGGGGTTTTGCCTCCAGGGCCACCGACTGCTCACACTGTGGGCTTAGGTAGAGCTCATTTAAGCAAGGAGCCTCTCCTCTTACCCAGAGAACGACACCCAGACTCTTTCCTCTCCCTTTTCTGTTTTCCTTTAAAACACTGCCAAAATGAATCTTATTTTTAAAAGCCCAAGTTATTTTGAAAGCATTGAAGTACCAAGGTGTTTCTGAATGTTTATGATTGTGGGACAAGCCAATTTGAAACCAAATGAATGTGTGTAAAAATATTCCCCCCCTTGGCCAAGACTGTGAAAGCTGAAGTTCAACTTGTGGTGAATTTTTATTGCCAAGTTATATATACCGCTCAGGGGTCTTTGTACCATCTGAGCTTACGGTGGCTGCTTCCCAGCTCCCTCGGAAGGCCTGGAGGGCACAGGGGTCCTGCTCGGGTAACTGTGAGGCTTGCATGTGCTGTGTGCTGAATAAGGCTGTGCGCTGCATTGCGTGTGCGTGCACCTCCTCGAGTTGTTTTTACTGGGAAAGCTGGAAACCATAAAACTGTAACAACAGCGCAAAAATATATTAGAGGGGAAAAACAAGCCTACAGTGCCAAAATCTATAAAGTGTTTTGGTGACTGGGGTGGGAGGAAGGAGCCACTTTTTGATGTCCAGCATTTGTACAGCTGCCGACTTCGACTTCGTGGTACGAATTCATAGCAGCTGTAATACCTCTAACACAGGAAGCCAGCAACTCACTGATATTTAAATGCCTCGTATGTCTTCATCCCTCCCCACACAG
Seq C2 exon
GAATGTAGAATCCTGAAGAATTTTTCCTCCTTGAGGGCCATCGTTTCCGCTCTACAGTCTAATTCCATCTATCGGTTGAAAAAGGCATGGGCTGCCGTCCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002347:ENSRNOT00000067135:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(32.0=100)
A:
NA
C2:
PF0061714=RasGEF=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]