BtaINT0124432 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019630 | RGL1
Description
ral guanine nucleotide dissociation stimulator-like 1 [Source:HGNC Symbol;Acc:HGNC:30281]
Coordinates
chr16:66397255-66401261:+
Coord C1 exon
chr16:66397255-66397470
Coord A exon
chr16:66397471-66401157
Coord C2 exon
chr16:66401158-66401261
Length
3687 bp
Sequences
Splice sites
5' ss Seq
CACGTAATT
5' ss Score
4.34
3' ss Seq
TTTAATCACTCTCTGTACAGGAA
3' ss Score
9.42
Exon sequences
Seq C1 exon
CAACTGTTTAAGAAAGTCGTGCCTCACCACTGCCTGGGCTGCATCTGGTCTCGAAGGGATAAGAAGGAGAACAAACACTTGGCCCCTACGATCCGTGCCACCATCTCTCAGTTTAACACCCTCACCAAATGTGTGGTCAGCACCATCCTGGGGGGCAAAGAACTCAAGACTCAGCAGAGAGCCAAGATCATCGAGAAGTGGATTAACATTGCTCAC
Seq A exon
GTAATTGTCTTTTTGAAAATATCCTTTGGGCTTAGCAGATAAGGGAGGCCATGCCATCATGCTGATGTTCCCACCTGGTTGAAAGGCAGTCAGAAAACCGTATGTGAGGGCCCATTGGGTTTTTGTTGTTCTTATCGTGGTCCTTCCAAAGTAAGGGAAAAAGTTGCCTTTCTTAACATGGGAGTTTATTTTCCTCTTTAAAAAAATGGGTCCCTTGCTCACTTCCTGCTGCTTATGGGCCCCCAATACTGCTGCTGCTTCAGGATGAAACAGAATGTCTGCTTTTTCACAGACTGTTGGTTCTGCCCTGTGTTCAGTACATATAAACTGGTGATCTCAGTGTCAGATAGACTGCTCTTCAATGCAGAAAGATTACCCCACCCCCCCTCCAGGACCTGGACGCAGTCTATCTTCTGCAAGCTTGAAGAGCCAGTACCTTCTCAGGATCTCACATCCCTTTTCTAAAGGACTGAAATATACAGATTCCATATTAATCAAGGGCTTTTCTGAGAGCCTTGCATCTGAAGTTGGAGGGACAGAGTCTATTCCTGTGGCTGAATTGCATTCTGCTGGGTGTCAGTCCAGTGTGCCGGATCAGCTGCATCCATGTCACATGACTTTGACCTTCATTTATCCGCATCTTATTTCCTGATTGAGAAAAGGTGAACAATAGTCAGTCAGTCAGTCACCACGTATTTCATGAGCCCATAAATGCTTCTGACCTGCAGTATTCTGTATGTTGAGGACATAGATAGGCTAAACACAGTTAATTTGGTCCTACAGGAGCCTATAGTCAAACAAGGAAGCTAAGAGACACTGGAGTCATCTCAGCCTAGAAGTGGAGTCATATGACATAAGTGCTGCAGAAGTGGGGGAGGGAGAAATCCGTCCTGGCTGGGGTGATCCAGGCAGGTTTTCATGGACAGGATGATACTTGAATTTAGCTTTGAATAACTGATAGTATTGGGGGTATTTGAAGATTGGGGAAGATTTATTTATTTATTTTTGTCTAGGCAGAAGAAACTATATCAGCAAGAGCTATGTAATTAACAACAATTTTGACAAATAATTTTTATGCAAATGTCCTCTGTTTTGGGCTATATGGGGTCAACTCTAACCAAAACACATTTTGTTTTCTACCCCATTATTTATTTTTCTCATTGAGCCCCTATCTGTGGGCATAAGACTTAAACTTTTACATTCTCTCTCTGTCTCTTTTGTTTCACATTCCCTTTTGTGGTCTTTGATTAAACAGCAGAGCCGTAATTGTGCCAAAGAGTTTCCTTTATTTTGAGTCTGTAGGTGGTCTGATACTACAGACTTTTTAGTATATGGAAAAATGCTATACGGAAGAAACAAATGTTTTACACAACTTATACTTCTCTTATTCTGAATTGAGCATATTTATCAGCAAGTAAGAGCCACAAAGGAAGTCCTGATAGAGTACGATAGAATATGAAATTTCTGTCTTCTTAGACTGATAGGAAAAAATATTTTTTTGGCCACAAATGCCAAAAGAAAATGTATTCAATTTAATGTATTCAACTGCTTCTAAAATCTGTGGTAAGCATATAGCATCTGTATACATGGCAGGGTGGCTCAAACAGTGACCTTGGTCCAAATTAAATACCAATTGTGCATTTATGTGATGGTAAGAAGTACAAGTTGTATAATTTCAGGTATATTCCAAATGCCGTAGCACGTGCTTAAAAGCCAGCGGTCTTTAACTCTTTGTGATGCACGAAACTGTGTCCCTTGAAATTGTGTAGGTGACTTAATAAAATAATAAGACTCACAGGTGTTTTCCAATAAAAATTTATTTTACTTTTCCTGAATTAATCATAGCCATTTTCTATTGAGAGGATGTTTGAAAAATGATACTTTTACATGCAGAAAATATTTCTGACCTAATATGACTGTTTTGTTGGAGTGGCCTTACTGCTACATTTTTGCATCAGATCTCCTCAAAGATCACTCCTTTTTTAGCAGTGGGGCCAGATGCCTCTTGTATTCCTTTAAACCCTTAGCTTAAGCCTCTTTCTGAATAATGTGTTCCATATGTTTATTACAATTTGCATGAAATAGCTGGGCCCGAGTTCTTTTATTTATTTCAAGTTTCCTGATTTTTTGAAAATAACTTTTGGATTCTGAACCTTTCTTGAACCATGTTCTCATGGGCTTGGTTTCCAGACTGTAATTCAGTGCTCTTGCTCTCTCTCTTTTACTCGCTCTCTTTTTAAATAAAAAGAAAGCATTGAGGCATTTCAAAAGAGTGGGCATGACTTTTGTAAAGAGCTTTGGCATTTACTTTTAAGAAAATCTTGGGGGGATGGGTTGTTGGTTTGGCATAGTAATTTTTTTTTAGTTCTTTCTTTTTTTTTTTTTTAAAGCTTTTTATTTTGTATTGGGGTATACCCGGTTAACAATATTGTGATAGTTTCAGGTGGACAGCAAAGGGACTCAGCCATACATATACATGTATCCATTCTCCCCCAAATGCCCCTCCTATCCAGGCTTGGCATAGTAATTTTAAGCAGCCAGATGTGGGCGTGCTAAGTTAAAGAATGCCATTTTCCCTTCACAGTCAGGACTAGCGTGACTTCGTGAAATGTTCTTTTAAGCAGTATGCATTTATGCCCAGCCACTCTGGGACCTCTTGCCTCAGATGTTCCGCATGAAGCCAAACCCATGGTCACGCGGCATACTCAGTCGTCGACAGTGGAAGTTTTACATTCCCACATGCCTGCGGATGAAGCACCTCCTTGGATACAAGGCATATTCGCCCCCCGCCACCAGGGCTTCCTCCTTCCCCGTTCTGGCTGTGAAGGGGACCCTCTCTCCCCCTGACTGTTTTGCTCTGCCTGCCATTCATTCAGCAGGATTTTGACTCCAAGGTCGCTGCCTGCTGATGCTACAGCCTCTGAATGGTAGCTTAAGTTTCAGGCTCTGGGAGGCTTTCTCCTTCTTCAGAAAATGACATCCAGAATGTTTCCTGTTCGCTTTCTATTTTGTTTTAAAATGCTGCCAAAATGAATTTTCTTTTAAAAGCCCAAGTTATTTTGGAAACATTGTAAGTACCAAGGTGTTTCTGAATGTTTATGATTGAGGCACAAGCCAATTGGAGCTCAAATGAATGTGTATAAAAATATTCCCTCTTGGCTAAGGACATAAGAGCCAAAGTTCAACTTGTGGTGAGTTTTTACTGCCAAGTTGTGTACCCCTTTCCAGACAAGGTTTGGTCATGAGATGTGTGATAGCATCTGACCTTGAAGCGGCTGCGACCTGGTTCGCTTTGTGGGTCTAAAGGTTACGGTCATCTTTCATGTGTATTTTTAGGGCATCTGTATGCTTTCAGCAGAAGAAAGTTTGCTTTCTCTAGCACAGCTCTGTAGGCTGACTGCCATTCGTGTTTTTACTGGGAAAGCTGGAAACTATAAAACTGTAACAACAACGCAAAAAAATATATTAAAGGGAGAAAAACAAGCATTCTGTGCCAAAATCTGTAAAGTGTTTCGGTGACTGGGGTGGGAGTATAAGGAGCCACTTTTTGATGTTCAGTATTTGTACAGCTGCCTATTTAGTGGTAAGAATTCATAGCAGCTGTGATACTTCTGAAACAGGAAACCACCAACTCACTGTATTATTGATATTTAAATGCCTTGTATGTTTTAATCACTCTCTGTACAG
Seq C2 exon
GAATGTAGAATCCTGAAGAATTTCTCCTCCTTGAGGGCCATCGTTTCGGCGCTGCAGTCCAATTCCATCTATCGTTTAAAAAAGACTTGGGCTGCGGTCCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019630:ENSBTAT00000026153:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(32.0=100)
A:
NA
C2:
PF0061714=RasGEF=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development