MmuINT0135420 @ mm9
Intron Retention
Gene
ENSMUSG00000010086 | Rnf112
Description
ring finger protein 112 [Source:MGI Symbol;Acc:MGI:106611]
Coordinates
chr11:61265246-61265643:-
Coord C1 exon
chr11:61265515-61265643
Coord A exon
chr11:61265351-61265514
Coord C2 exon
chr11:61265246-61265350
Length
164 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTGGTTTGTATCCTTAATAGGTG
3' ss Score
7.76
Exon sequences
Seq C1 exon
GAATCTGGTGACAGCGGCAGGCCCAGAGCAGAGGGGTCTCTGCCTGGGATCAGATGGGGCGCTAACGGCCTCACGAGGGGTATCTGGATGTGGAGTCACCCCTTCCTGCTGGGAAAAGAGGGGAAGAAG
Seq A exon
GTGAGGGAGAAAAGTAGATGGAAGTTAGTGTGGAGAGGGGAAAGGGAGGGAAGAGGGCAGGCAGGAAGGAGAGAGGAAGGAGAAGGGCATCTCCAGGGTAAGGACCAAGAAAGGGGTTAGGCAGAGCAAGACAGGCCTAACCCTTTGGTTTGTATCCTTAATAG
Seq C2 exon
GTGGCTGTGTTCTTAGTGGACACGGGGGATGTCATGAGCCCAGAACTGAGCAAGGAGACAAGGGTCAAGCTCTGTGCTCTCACCATGATGCTCAGTTCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000010086-Rnf112:NM_009548:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(15.1=100)
A:
NA
C2:
PF0226314=GBP=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGCCCAGAGCAGAG
R:
TGGTAGGAACTGAGCATCATGG
Band lengths:
218-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: