HsaINT0141193 @ hg38
Intron Retention
Gene
ENSG00000128482 | RNF112
Description
ring finger protein 112 [Source:HGNC Symbol;Acc:HGNC:12968]
Coordinates
chr17:19413280-19413681:+
Coord C1 exon
chr17:19413280-19413411
Coord A exon
chr17:19413412-19413576
Coord C2 exon
chr17:19413577-19413681
Length
165 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTTCCCTACCCCCTGCATAGGTG
3' ss Score
9.73
Exon sequences
Seq C1 exon
GAGTCTGGTGAGGGCGGCCGGCCAAGAGGAGGAGAGGCATCCCTGCAGGGCTGCAGGTGGGGCGCCAATGGCCTCGCCAGGGGCATATGGATGTGGAGCCACCCCTTCTTGCTGGGGAAAGAAGGGAAGAAG
Seq A exon
GTGAGGGGGGAAGTGGCAGAAGGAGGTCAGGGATGGGAAGGGGAATCAAGAAGGGCGTCTCTGGGGTGAGGATAGAAGATGGGGATGGGACGGGGCAGGGTTGGGAAGAATGTGGGAGAACAAGGCAGGCCTGGCCCCTTGGGTCTTTCCCTACCCCCTGCATAG
Seq C2 exon
GTGGCGGTGTTCCTGGTGGACACAGGGGATGCCATGAGCCCTGAGCTGAGCAGGGAAACAAGGATCAAGCTCTGTGCTCTCACCACGATGCTGAGCTCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128482:ENST00000461366:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(17.0=100)
A:
NA
C2:
PF0226314=GBP=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTGGTGAGGGCGGC
R:
CTGGTAGGAGCTCAGCATCGT
Band lengths:
237-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development