MmuINT1029919 @ mm10
Intron Retention
Gene
ENSMUSG00000010086 | Rnf112
Description
ring finger protein 112 [Source:MGI Symbol;Acc:MGI:106611]
Coordinates
chr11:61451744-61452141:-
Coord C1 exon
chr11:61452013-61452141
Coord A exon
chr11:61451849-61452012
Coord C2 exon
chr11:61451744-61451848
Length
164 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTGGTTTGTATCCTTAATAGGTG
3' ss Score
7.76
Exon sequences
Seq C1 exon
GAATCTGGTGACAGCGGCAGGCCCAGAGCAGAGGGGTCTCTGCCTGGGATCAGATGGGGCGCTAACGGCCTCACGAGGGGTATCTGGATGTGGAGTCACCCCTTCCTGCTGGGAAAAGAGGGGAAGAAG
Seq A exon
GTGAGGGAGAAAAGTAGATGGAAGTTAGTGTGGAGAGGGGAAAGGGAGGGAAGAGGGCAGGCAGGAAGGAGAGAGGAAGGAGAAGGGCATCTCCAGGGTAAGGACCAAGAAAGGGGTTAGGCAGAGCAAGACAGGCCTAACCCTTTGGTTTGTATCCTTAATAG
Seq C2 exon
GTGGCTGTGTTCTTAGTGGACACGGGGGATGTCATGAGCCCAGAACTGAGCAAGGAGACAAGGGTCAAGCTCTGTGCTCTCACCATGATGCTCAGTTCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000010086:ENSMUST00000060255:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(16.6=100)
A:
NA
C2:
PF0226314=GBP=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGCCCAGAGCAGAG
R:
TGGTAGGAACTGAGCATCATGG
Band lengths:
218-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types