RnoINT0127588 @ rn6
Intron Retention
Gene
ENSRNOG00000002364 | Rnf112
Description
ring finger protein 112 [Source:RGD Symbol;Acc:3986]
Coordinates
chr10:47722339-47722774:-
Coord C1 exon
chr10:47722646-47722774
Coord A exon
chr10:47722444-47722645
Coord C2 exon
chr10:47722339-47722443
Length
202 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTGGTCTGCGTCCTTAATAGGTG
3' ss Score
8.94
Exon sequences
Seq C1 exon
GAATCCGGAGACAGCACTAGGCCCAGAGCAGAGGGGTCTCTGCCTGGAATCAGATGGGGTGCTAATGGTCTCACGAGGGGCATCTGGATGTGGAGTCACCCCTTCCTGCTGGGAAAAGAAGGGAAGAAG
Seq A exon
GTGAGGGAGAAAAGAAGGTGGAAGTTATCATGGATCAGGGAGGGGAAGTGGAGGCGACAGGGTGGAGAGATGGAGGGGAGAGGGACGGAAGAGGGTAGGCAGGAAGGAGAGAGGAATGAGAAGGACAGCTCCAGGGAAAGGACAAAGAAAAGGGTTAGGCAGAGCAAGGCAGGCCTAACCCTTTGGTCTGCGTCCTTAATAG
Seq C2 exon
GTGGCTGTGTTCTTAGTGGACACAGGAGATGTCATGAGCCCAGAACTGAGCAGGGAGACAAGGGTCAAGCTCTGTGCCCTCACCATGATGCTCAGTTCGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002364:ENSRNOT00000003228:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(16.5=100)
A:
NA
C2:
PF0226314=GBP=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCGGAGACAGCACTAGGC
R:
ACGAACTGAGCATCATGGTGA
Band lengths:
228-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]